Dr. Spencer Edward Bliven
Scientist
High Performance Computing and Emerging Technologies Group >>
Building/Room: OHSA/D17 & OFLC/103
Paul Scherrer Institute
Forschungsstrasse 111
5232 Villigen PSI
Switzerland
Forschungsstrasse 111
5232 Villigen PSI
Switzerland
Telephone
Email
Publications
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Delucchi M, Näf P, Bliven S, Anisimova M
TRAL 2.0: tandem repeat detection with circular profile hidden markov models and evolutionary aligner
Frontiers in Bioinformatics. 2021; 1: 691865 (6 pp.). https://doi.org/10.3389/fbinf.2021.691865
DORA PSI -
Bliven SE, Lafita A, Rose PW, Capitani G, Prlić A, Bourne PE
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm
PLoS Computational Biology. 2019; 15(4): e1006842 (18 pp.). https://doi.org/10.1371/journal.pcbi.1006842
DORA PSI -
Bliven S, Lafita A, Parker A, Capitani G, Duarte JM
Automated evaluation of quaternary structures from protein crystals
PLoS Computational Biology. 2018; 14(4): e1006104 (19 pp.). https://doi.org/10.1371/journal.pcbi.1006104
DORA PSI -
Lafita A, Bliven S, Kryshtafovych A, Bertoni M, Monastyrskyy B, Duarte JM, et al.
Assessment of protein assembly prediction in CASP12
Proteins. 2018; 86(S1): 247-256. https://doi.org/10.1002/prot.25408
DORA PSI -
Liu T, Ish-Shalom S, Torng W, Lafita A, Bock C, Mort M, et al.
Biological and functional relevance of CASP predictions
Proteins. 2018; 86(1): 374-386. https://doi.org/10.1002/prot.25396
DORA PSI -
Markovic-Mueller S, Stuttfeld E, Asthana M, Weinert T, Bliven S, Goldie KN, et al.
Structure of the full-length VEGFR-1 extracellular domain in complex with VEGF-A
Structure. 2017; 25(2): 341-352. https://doi.org/10.1016/j.str.2016.12.012
DORA PSI -
Zhao Z, Liu Q, Bliven S, Xie L, Bourne PE
Determining cysteines available for covalent inhibition across the human kinome
Journal of Medicinal Chemistry. 2017; 60(7): 2879-2889. https://doi.org/10.1021/acs.jmedchem.6b01815
DORA PSI -
Capitani G, Duarte JM, Baskaran K, Bliven S, Somody JC
Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts
Bioinformatics. 2016; 32(4): 481-489. https://doi.org/10.1093/bioinformatics/btv622
DORA PSI -
Baskaran K, Duarte JM, Biyani N, Bliven S, Capitani G
A PDB-wide, evolution-based assessment of protein-protein interfaces
BMC Structural Biology. 2014; 14(1): 22. https://doi.org/10.1186/s12900-014-0022-0
DORA PSI