LNB Publications 2021 - 2024

2024

  • Straumann N, Combes BF, Dean Ben XL, Sternke-Hoffmann R, Gerez JA, Dias I, et al.
    Visualizing alpha-synuclein and iron deposition in M83 mouse model of Parkinson's disease in vivo
    Brain Pathology. 2024: e13288 (14 pp.). https://doi.org/10.1111/bpa.13288
    DORA PSI
  • Sternke-Hoffmann R, Sun X, Menzel A, Pinto MDS, Venclovaite U, Wördehoff M, et al.
    Phase separation and aggregation of α-synuclein diverge at different salt conditions
    Advanced Science. 2024: 2308279 (15 pp.). https://doi.org/10.1002/advs.202308279
    DORA PSI
  • Leppert A, Feng J, Railaite V, Bohn Pessatti T, Cerrato CP, Mörman C, et al.
    Controlling drug partitioning in individual protein condensates through laser-induced microscale phase transitions
    Journal of the American Chemical Society. 2024; 146(28): 19555-19565. https://doi.org/10.1021/jacs.4c06688
    DORA PSI
  • Yuan S, Li S, Ruan J, Liu H, Jiang T, Dai H
    Chronic kidney disease and pulmonary hypertension: progress in diagnosis and treatment
    Translational Research. 2024; 273: 16-22. https://doi.org/10.1016/j.trsl.2024.06.003
    DORA PSI
  • Latychevskaia T, Bandurin DA, Novoselov KS
    A new family of septuple-layer 2D materials of MoSi2N4-like crystals
    Nature Reviews Physics. 2024; 6: 426-438. https://doi.org/10.1038/s42254-024-00728-x
    DORA PSI
  • Matinyan S, Filipcik P, van Genderen E, Abrahams JP
    DiffraGAN: a conditional generative adversarial network for phasing single molecule diffraction data to atomic resolution
    Frontiers in Molecular Biosciences. 2024; 11: 1386963 (11 pp.). https://doi.org/10.3389/fmolb.2024.1386963
    DORA PSI
  • Wicki F, Latychevskaia T
    Double-slit holography—a single-shot lensless imaging technique
    Scientific Reports. 2024; 14: 12528 (9 pp.). https://doi.org/10.1038/s41598-024-62785-7
    DORA PSI
  • Huang J, Clark AH, Hales N, Borca CN, Huthwelker T, Skoupy R, et al.
    Spectroscopic investigations of complex electronic interactions by elemental doping and material compositing of cobalt oxide for enhanced oxygen evolution reaction activity
    Advanced Functional Materials. 2024. https://doi.org/10.1002/adfm.202405384
    DORA PSI
  • Tsujino S, Sato Y, Jia S, Kepa MW, Trampari S, Tomizaki T
    Inertial mixing of acoustically levitated droplets for time-lapse protein crystallography
    Droplet. 2024; e132. https://doi.org/10.1002/dro2.132
    DORA PSI
  • Mortelmans T, Marty B, Kazazis D, Padeste C, Li X, Ekinci Y
    Three-dimensional microfluidic capillary device for rapid and multiplexed immunoassays in whole blood
    ACS Sensors. 2024; 9(5): 2455-2464. https://doi.org/10.1021/acssensors.4c00153
    DORA PSI
  • Das R, Sakaue T, Shivashankar GV, Prost J, Hiraiwa T
    Chromatin remodeling due to transient-link-and-pass activity enhances subnuclear dynamics
    Physical Review Letters. 2024; 132(5): 058401 (6 pp.). https://doi.org/10.1103/PhysRevLett.132.058401
    DORA PSI
  • Cellini A, Shankar MK, Nimmrich A, Hunt LA, Monrroy L, Mutisya J, et al.
    Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography
    Nature Chemistry. 2024; 16: 624-632. https://doi.org/10.1038/s41557-023-01413-9
    DORA PSI
  • Matinyan S, Filipcik P, Abrahams JP
    Deep learning applications in protein crystallography
    Acta Crystallographica Section A: Foundations and Advances. 2024; 80(1): 1-17. https://doi.org/10.1107/S2053273323009300
    DORA PSI
  • Xie X, Barba Flores L, Bejar Haro B, Bergamaschi A, Fröjdh E, Müller E, et al.
    Enhancing spatial resolution in MÖNCH for electron microscopy via deep learning
    Journal of Instrumentation. 2024; 19(01): C01020 (11 pp.). https://doi.org/10.1088/1748-0221/19/01/C01020
    DORA PSI
  • Wu J, Wang X, Lakkaraju A, Sternke-Hoffmann R, Qureshi BM, Aguzzi A, et al.
    Channel activities of the full-length prion and truncated proteins
    ACS Chemical Neuroscience. 2024; 15(1): 98-107. https://doi.org/10.1021/acschemneuro.3c00412
    DORA PSI
  • Cerboni N, de Bodin-de Galembert G, De Gerone M, Gallucci G, Müller E, Nucciotti A, et al.
    Development and implementation of holmium sources produced by molecular plating for the HOLMES experiment
    Materials Chemistry and Physics. 2024; 314: 128837 (9 pp.). https://doi.org/10.1016/j.matchemphys.2023.128837
    DORA PSI
  • Braunger JM, Cammarata LV, Sornapudi TR, Uhler C, Shivashankar GV
    Transcriptional changes are tightly coupled to chromatin reorganization during cellular aging
    Aging cell. 2024; 23(3): e14056 (18 pp.). https://doi.org/10.1111/acel.14056
    DORA PSI
  • Roy B, Pekec T, Yuan L, Shivashankar GV
    Implanting mechanically reprogrammed fibroblasts for aged tissue regeneration and wound healing
    Aging cell. 2024; 23(2): e14032 (14 pp.). https://doi.org/10.1111/acel.14032
    DORA PSI

2023

  • Gingold T, Arias Vázquez A, Daniluk G, Serrano J, Włostowski T, Rizzi M
    HydRA: a system-on-chip to run software in radiation-exposed areas
    In: 19th international conference on accelerator large experimental physics control system. Geneva: JACoW Publishing; 2023:217-221. https://doi.org/10.18429/JACoW-ICALEPCS2023-MO4AO02
    DORA PSI
  • Claudio N, Nguyen M-T, Wanner A, Pucci F
    Sequential chromogenic IHC: spatial analysis of lymph nodes identifies contact interactions between plasmacytoid dendritic cells and plasmablasts
    Cancer Research Communications. 2023; 3(7): 1237-1247. https://doi.org/10.1158/2767-9764.CRC-23-0102
    DORA PSI
  • Pauly T, Zhang T, Sternke-Hoffmann R, Nagel-Steger L, Willbold D
    Differentiation of subnucleus-sized oligomers and nucleation-competent assemblies of the Aβ peptide
    Biophysical Journal. 2023; 122(2): 269-278. https://doi.org/10.1016/j.bpj.2022.12.020
    DORA PSI
  • Challa K, Paysan D, Leiser D, Sauder N, Weber DC, Shivashankar GV
    Imaging and AI based chromatin biomarkers for diagnosis and therapy evaluation from liquid biopsies
    npj Precision Oncology. 2023; 7: 135 (13 pp.). https://doi.org/10.1038/s41698-023-00484-8
    DORA PSI
  • Wranik M, Kepa MW, Beale EV, James D, Bertrand Q, Weinert T, et al.
    A multi-reservoir extruder for time-resolved serial protein crystallography and compound screening at X-ray free-electron lasers
    Nature Communications. 2023; 14(1): 7956 (12 pp.). https://doi.org/10.1038/s41467-023-43523-5
    DORA PSI
  • Cvjetan N, Schuler LD, Ishikawa T, Walde P
    Optimization and enhancement of the peroxidase-like activity of hemin in aqueous solutions of sodium dodecylsulfate
    ACS Omega. 2023; 8(45): 42878-42899. https://doi.org/10.1021/acsomega.3c05915
    DORA PSI
  • Pekeč T, Venkatachalapathy S, Shim AR, Paysan D, Grzmil M, Schibli R, et al.
    Detecting radio- and chemoresistant cells in 3D cancer co-cultures using chromatin biomarkers
    Scientific Reports. 2023; 13(1): 20662 (14 pp.). https://doi.org/10.1038/s41598-023-47287-2
    DORA PSI
  • Matinyan S, Abrahams JP
    TERSE/PROLIX (TRPX) - a new algorithm for fast and lossless compression and decompression of diffraction and cryo-EM data
    Acta Crystallographica Section A: Foundations and Advances. 2023; 79(6): 536-541. https://doi.org/10.1107/S205327332300760X
    DORA PSI
  • Shivashankar GV
    Mechanical forces and the 3D genome
    Current Opinion in Structural Biology. 2023; 83: 102728 (7 pp.). https://doi.org/10.1016/j.sbi.2023.102728
    DORA PSI
  • Carrillo M, Mason TJ, Karpik A, Martiel I, Kepa MW, McAuley KE, et al.
    Micro-structured polymer fixed targets for serial crystallography at synchrotrons and XFELs
    IUCrJ. 2023; 10(6): 678-693. https://doi.org/10.1107/S2052252523007595
    DORA PSI
  • Latychevskaia T
    Controlling topological states in bilayer graphene
    Nature Nanotechnology. 2023; 18: 1126-1127. https://doi.org/10.1038/s41565-023-01454-8
    DORA PSI
  • Gomes CM, Hoyer W, Luo J
    Editorial: The biochemistry of amyloids in neurodegenerative diseases, volume II
    Frontiers in Neuroscience. 2023; 17: 1236518 (2 pp.). https://doi.org/10.3389/fnins.2023.1236518
    DORA PSI
  • Latychevskaia T
    Coherent imaging with low-energy electrons, quantitative analysis
    Ultramicroscopy. 2023; 253: 113807 (10 pp.). https://doi.org/10.1016/j.ultramic.2023.113807
    DORA PSI
  • Matinyan S, Demir B, Filipcik P, Abrahams JP, van Genderen E
    Machine learning for classifying narrow-beam electron diffraction data
    Acta Crystallographica Section A: Foundations and Advances. 2023; 79: 360-368. https://doi.org/10.1107/S2053273323004680
    DORA PSI
  • Zimmermann N, Noga A, Obbineni JM, Ishikawa T
    ATP-induced conformational change of axonemal outer dynein arms revealed by cryo-electron tomography
    EMBO Journal. 2023; 42(12): e112466 (15 pp.). https://doi.org/10.15252/embj.2022112466
    DORA PSI
  • Jiang K, Lim SB, Xiao J, Jokhun DS, Shang M, Song X, et al.
    Deleterious mechanical deformation selects mechanoresilient cancer cells with enhanced proliferation and chemoresistance
    Advanced Science. 2023; 10(22): 2201663 (15 pp.). https://doi.org/10.1002/advs.202201663
    DORA PSI
  • Ishikawa T
    Architecture of intraflagellar transport complexes
    Nature Structural and Molecular Biology. 2023; 30(5): 570-573. https://doi.org/10.1038/s41594-023-00986-w
    DORA PSI
  • Qin Y, Imobersteg S, Frank S, Blanc A, Chiorazzo T, Berger P, et al.
    Signaling network response to α-particle–targeted therapy with the 225Ac-labeled minigastrin analog 225Ac-PP-F11N reveals the radiosensitizing potential of histone deacetylase inhibitors
    Journal of Nuclear Medicine. 2023; 64(6): 873-879. https://doi.org/10.2967/jnumed.122.264597
    DORA PSI
  • Liu C, Henning-Knechtel A, Österlund N, Wu J, Wang G, Gräslund RAO, et al.
    Oligomer dynamics of LL-37 truncated fragments probed by α-hemolysin pore and molecular simulations
    Small. 2023; 19(37): 2206232 (11 pp.). https://doi.org/10.1002/smll.202206232
    DORA PSI
  • Liu C, Luo J
    Protein oligomer engineering: a new frontier for studying protein structure, function, and toxicity
    Angewandte Chemie International Edition. 2023; 62(23): e202216480 (12 pp.). https://doi.org/10.1002/anie.202216480
    DORA PSI
  • Goswami Y, Sastry S
    Kinetic reconstruction of free energies as a function of multiple order parameters
    Journal of Chemical Physics. 2023; 158(14): 144502 (17 pp.). https://doi.org/10.1063/5.0144338
    DORA PSI
  • Farnung J, Muhar M, Liang JR, Tolmachova KA, Benoit RM, Corn JE, et al.
    Semisynthetic LC3 probes for autophagy pathways reveal a noncanonical LC3 interacting region motif crucial for the enzymatic activity of human ATG3
    ACS Central Science. 2023; 9(5): 1025-1034. https://doi.org/10.1021/acscentsci.3c00009
    DORA PSI
  • Moazeni M, Berger P, Padeste C
    Polymer brush structures functionalized with molecular beacon for point-of-care diagnostics
    Micro and Nano Engineering. 2023; 19: 100184 (9 pp.). https://doi.org/10.1016/j.mne.2023.100184
    DORA PSI
  • França LVS, Müller E, Yukihara EG, Baffa O
    A Tb and Ag co-doped borate compound forms a high sensitive X-ray, gamma-ray and neutron luminescence dosimeter
    Journal of Materials Chemistry C. 2023; 11(13): 4444-4455. https://doi.org/10.1039/d3tc00223c
    DORA PSI
  • Ukleev V, Burian M, Gliga S, Vaz CAF, Rösner B, Fainozzi D, et al.
    Effect of intense x-ray free-electron laser transient gratings on the magnetic domain structure of Tm:YIG
    Journal of Applied Physics. 2023; 133(12): 123902 (6 pp.). https://doi.org/10.1063/5.0119241
    DORA PSI
  • De Angelis S, Schuler T, Sabharwal M, Holler M, Guizar-Sicairos M, Müller E, et al.
    Understanding the microstructure of a core-shell anode catalyst layer for polymer electrolyte water electrolysis
    Scientific Reports. 2023; 13(1): 4280 (11 pp.). https://doi.org/10.1038/s41598-023-30960-x
    DORA PSI
  • Mustafi S, Latychevskaia T
    Fourier transform holography: a lensless imaging technique, its principles and applications
    Photonics. 2023; 10(2): 153 (28 pp.). https://doi.org/10.3390/photonics10020153
    DORA PSI
  • Wu J, Yamashita T, Hamilton AD, Thompson S, Luo J
    Single-molecule nanopore dielectrophoretic trapping of α-synuclein with lipid membranes
    Cell Reports Physical Science. 2023; 4(2): 101243 (13 pp.). https://doi.org/10.1016/j.xcrp.2022.101243
    DORA PSI
  • Wranik M, Weinert T, Slavov C, Masini T, Furrer A, Gaillard N, et al.
    Watching the release of a photopharmacological drug from tubulin using time-resolved serial crystallography
    Nature Communications. 2023; 14(1): 903 (12 pp.). https://doi.org/10.1038/s41467-023-36481-5
    DORA PSI
  • Behbahanipour M, Benoit R, Navarro S, Ventura S
    OligoBinders: bioengineered soluble amyloid-like nanoparticles to bind and neutralize SARS-CoV-2
    ACS Applied Materials and Interfaces. 2023; 15(9): 11444-11457. https://doi.org/10.1021/acsami.2c18305
    DORA PSI
  • Loch RA, Wang H, Perálvarez-Marín A, Berger P, Nielsen H, Chroni A, et al.
    Cross interactions between Apolipoprotein E and amyloid proteins in neurodegenerative diseases
    Computational and Structural Biotechnology Journal. 2023; 21: 1189-1204. https://doi.org/10.1016/j.csbj.2023.01.022
    DORA PSI
  • Sternke-Hoffmann R, Pauly T, Norrild RK, Hansen J, Tucholski F, Høie MH, et al.
    Widespread amyloidogenicity potential of multiple myeloma patient-derived immunoglobulin light chains
    BMC Biology. 2023; 21: 21 (25 pp.). https://doi.org/10.1186/s12915-022-01506-w
    DORA PSI
  • Lacey SD, Gilardi E, Müller E, Merckling C, Saint-Girons G, Botella C, et al.
    Integration of Li4Ti5O12 crystalline films on silicon toward high-rate performance lithionic devices
    ACS Applied Materials and Interfaces. 2023; 15(1): 1535-1544. https://doi.org/10.1021/acsami.2c17073
    DORA PSI
  • Ishikawa T
    Mass-spec, cryo-EM and AI join forces for a close look at the transporter complex in cilia
    EMBO Journal. 2023; 42: e113010 (3 pp.). https://doi.org/10.15252/embj.2022113010
    DORA PSI
  • Beck A, Kazazis D, Ekinci Y, Li X, Müller Gubler EA, Kleibert A, et al.
    The extent of platinum-induced hydrogen spillover on cerium dioxide
    ACS Nano. 2023; 17(2): 1091-1099. https://doi.org/10.1021/acsnano.2c08152
    DORA PSI
  • Latychevskaia T, Woods CR, Wang YB, Holwill M, Prestat E, Mustafi S, et al.
    Potentials of individual atoms by convergent beam electron diffraction
    Carbon. 2023; 201: 244-250. https://doi.org/10.1016/j.carbon.2022.09.003
    DORA PSI

2022

  • Ströh S, Hammerschmith EW, Tank DW, Seung HS, Wanner AA
    In situ X-ray-assisted electron microscopy staining for large biological samples
    eLife. 2022; 11: e72147 (19 pp.). https://doi.org/10.7554/eLife.72147
    DORA PSI
  • Neumann C, Focht D, Trampari S, Lyons JA, Nissen P
    Variations on a theme: crystal forms of the amino-acid transporter MhsT
    Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 2022; 78: 297-305. https://doi.org/10.1107/S2053230X22007154
    DORA PSI
  • Das R, Sakaue T, Shivashankar GV, Prost J, Hiraiwa T
    How enzymatic activity is involved in chromatin organization
    eLife. 2022; 11: e79901 (18 pp.). https://doi.org/10.7554/eLife.79901
    DORA PSI
  • Jia S, Sato Y, Tsujino S
    Size and shape dependent rotation characteristics of thin film ultrasonic rotors
    Applied Physics Letters. 2022; 121(25): 254102 (6 pp.). https://doi.org/10.1063/5.0126000
    DORA PSI
  • Jia S, Sato Y, Lim RYH, Tsujino S
    Rotation characteristics of acoustically actuated thin-film rotors in air and water
    In: IUS 2022. Symposium proceedings. IEEE international ultrasonics symposium. Piscataway: IEEE; 2022:(2 pp.). https://doi.org/10.1109/IUS54386.2022.9958207
    DORA PSI
  • Wang H, Wu J, Sternke-Hoffmann R, Zheng W, Mörman C, Luo J
    Multivariate effects of pH, salt, and Zn2+ ions on Aβ40 fibrillation
    Communications Chemistry. 2022; 5(1): 171 (12 pp.). https://doi.org/10.1038/s42004-022-00786-1
    DORA PSI
  • Zhang X, Wang X, Shivashankar GV, Uhler C
    Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease
    Nature Communications. 2022; 13(1): 7480 (17 pp.). https://doi.org/10.1038/s41467-022-35233-1
    DORA PSI
  • Varol R, Karavelioglu Z, Omeroglu S, Aydemir G, Karadag A, Meco HE, et al.
    Acousto-holographic reconstruction of whole-cell stiffness maps
    Nature Communications. 2022; 13(1): 7351 (10 pp.). https://doi.org/10.1038/s41467-022-35075-x
    DORA PSI
  • Svara F, Förster D, Kubo F, Januszewski M, dal Maschio M, Schubert PJ, et al.
    Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain
    Nature Methods. 2022; 19: 1357-1366. https://doi.org/10.1038/s41592-022-01621-0
    DORA PSI
  • Yuan L, Roy B, Ratna P, Uhler C, Shivashankar GV
    Lateral confined growth of cells activates Lef1 dependent pathways to regulate cell-state transitions
    Scientific Reports. 2022; 12(1): 17318 (13 pp.). https://doi.org/10.1038/s41598-022-21596-4
    DORA PSI
  • Wu Q, Soppa K, Müller E, Müller J, Odstrcil M, Tsai EHR, et al.
    A modern look at a medieval bilayer metal leaf: nanotomography of Zwischgold
    Nanoscale. 2022; 14(40): 15165-15180. https://doi.org/10.1039/D2NR03367D
    DORA PSI
  • Venkatachalapathy S, Sreekumar D, Ratna P, Shivashankar GV
    Actomyosin contractility as a mechanical checkpoint for cell state transitions
    Scientific Reports. 2022; 12(1): 16063 (13 pp.). https://doi.org/10.1038/s41598-022-20089-8
    DORA PSI
  • Wu J, Österlund N, Wang H, Sternke-Hoffmann R, Pupart H, Ilag LL, et al.
    Identifying the role of co-aggregation of Alzheimer's amyloid-β with amorphous protein aggregates of non-amyloid proteins
    Cell Reports Physical Science. 2022; 3(9): 101028 (22 pp.). https://doi.org/10.1016/j.xcrp.2022.101028
    DORA PSI
  • Noga A, Horii M, Goto Y, Toyooka K, Ishikawa T, Hirono M
    Bld10p/Cep135 determines the number of triplets in the centriole independently of the cartwheel
    EMBO Journal. 2022; 41(20): e104582 (14 pp.). https://doi.org/10.15252/embj.2020104582
    DORA PSI
  • Holler M, Aidukas T, Heller L, Appel C, Phillips NW, Müller-Gubler E, et al.
    Environmental control for X-ray nanotomography
    Journal of Synchrotron Radiation. 2022; 29: 1223-1231. https://doi.org/10.1107/S1600577522006968
    DORA PSI
  • Fatton M, Filippidou S, Junier T, Cailleau G, Berge M, Poppleton D, et al.
    Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes
    Environmental Microbiology. 2022; 24(12): 6320-6335. https://doi.org/10.1111/1462-2920.16145
    DORA PSI
  • Mohammed I, Schmitz KA, Schenck N, Balasopoulos D, Topitsch A, Maier T, et al.
    Catalytic cycling of human mitochondrial Lon protease
    Structure. 2022; 30(9): 1254-1268. https://doi.org/10.1016/j.str.2022.06.006
    DORA PSI
  • Zeng Y, Zhuang Y, Vinod B, Guo X, Mitra A, Chen P, et al.
    Guiding irregular nuclear morphology on nanopillar arrays for malignancy differentiation in tumor cells
    Nano Letters. 2022; 22(18): 7724-7733. https://doi.org/10.1021/acs.nanolett.2c01849
    DORA PSI
  • Heydenreich FM, Plouffe B, Rizk A, Milić D, Zhou J, Breton B, et al.
    Michaelis-Menten quantification of ligand signaling bias applied to the promiscuous vasopressin V2 receptor
    Molecular Pharmacology. 2022; 102(3): 139-149. https://doi.org/10.1124/molpharm.122.000497
    DORA PSI
  • de la Roche NM, Mühlethaler T, Di Martino RMC, Ortega JA, Gioia D, Roy B, et al.
    Novel fragment-derived colchicine-site binders as microtubule-destabilizing agents
    European Journal of Medicinal Chemistry. 2022; 241: 114614 (12 pp.). https://doi.org/10.1016/j.ejmech.2022.114614
    DORA PSI
  • Wang H, Mörman C, Sternke-Hoffmann R, Huang CY, Prota A, Ma P, et al.
    Cu2+ ions modulate the interaction between α-synuclein and lipid membranes
    Journal of Inorganic Biochemistry. 2022; 236: 111945 (10 pp.). https://doi.org/10.1016/j.jinorgbio.2022.111945
    DORA PSI
  • Smirnova J, Gavrilova J, Noormägi A, Valmsen K, Pupart H, Luo J, et al.
    Evaluation of Zn2+- and Cu2+-binding affinities of native Cu,Zn-SOD1 and its G93A mutant by LC-ICP MS
    Molecules. 2022; 27(10): 3160 (11 pp.). https://doi.org/10.3390/molecules27103160
    DORA PSI
  • Latychevskaia T, Huang P, Novoselov KS
    Imaging defects in two-dimensional crystals by convergent-beam electron diffraction
    Physical Review B. 2022; 105(18): 184113 (7 pp.). https://doi.org/10.1103/PhysRevB.105.184113
    DORA PSI
  • Latychevskaia T, Kohli A
    Low-dose shift- and rotation-invariant diffraction recognition imaging
    Scientific Reports. 2022; 12(1): 11202 (9 pp.). https://doi.org/10.1038/s41598-022-15486-y
    DORA PSI
  • Biswas B, Michel VF, Fjellvåg ØS, Bimashofer G, Döbeli M, Jambor M, et al.
    Role of dy on the magnetic properties of orthorhombic DyFeO3
    Physical Review Materials. 2022; 6(7): 074401 (9 pp.). https://doi.org/10.1103/PhysRevMaterials.6.074401
    DORA PSI
  • Uhler C, Shivashankar GV
    Machine learning approaches to single-cell data integration and translation
    Proceedings of the IEEE. 2022; 110(5): 557-576. https://doi.org/10.1109/JPROC.2022.3166132
    DORA PSI
  • Mühlethaler T, Milanos L, Ortega JA, Blum TB, Gioia D, Roy B, et al.
    Rational design of a novel tubulin inhibitor with a unique mechanism of action
    Angewandte Chemie International Edition. 2022; 61(25): e202204052 (11 pp.). https://doi.org/10.1002/anie.202204052
    DORA PSI
  • Zhang Q, Liu Y, Wu J, Zeng L, Wei J, Fu S, et al.
    Structure and mechanism behind the inhibitory effect of water soluble metalloporphyrins on Aβ1-42 aggregation
    Inorganic Chemistry Frontiers. 2022; 9(7): 1520-1532. https://doi.org/10.1039/d1qi01434j
    DORA PSI
  • Bavinton CE, Sternke-Hoffmann R, Yamashita T, Knipe PC, Hamilton AD, Luo J, et al.
    Rationally designed helical peptidomimetics disrupt α-synuclein fibrillation
    Chemical Communications. 2022; 58(33): 5132-5135. https://doi.org/10.1039/d2cc00212d
    DORA PSI
  • Kepa MW, Tomizaki T, Sato Y, Ozerov D, Sekiguchi H, Yasuda N, et al.
    Acoustic levitation and rotation of thin films and their application for room temperature protein crystallography
    Scientific Reports. 2022; 12: 5349 (14 pp.). https://doi.org/10.1038/s41598-022-09167-z
    DORA PSI
  • Tsujino S
    On the brightness, transverse emittance, and transverse coherence of field emission beam
    Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 2022; 40(3): 030801 (12 pp.). https://doi.org/10.1116/6.0001776
    DORA PSI
  • Fröjdh E, Abrahams JP, Andrä M, Barten R, Bergamaschi A, Brückner M, et al.
    Electron detection with CdTe and GaAs sensors using the charge integrating hybrid pixel detector JUNGFRAU
    Journal of Instrumentation. 2022; 17: C01020 (12 pp.). https://doi.org/10.1088/1748-0221/17/01/C01020
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  • Alpert PA, Boucly A, Yang S, Yang H, Kilchhofer K, Luo Z, et al.
    Ice nucleation imaged with X-ray spectro-microscopy
    Environmental Science: Atmospheres. 2022; 2(3): 335-351. https://doi.org/10.1039/D1EA00077B
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  • Mortelmans T, Kazazis D, Padeste C, Berger P, Li X, Ekinci Y
    Poly(methyl methacrylate)-based nanofluidic device for rapid and multiplexed serological antibody detection of SARS-CoV-2
    ACS Applied Nano Materials. 2022; 5(1): 517-526. https://doi.org/10.1021/acsanm.1c03309
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  • Collu G, Bierig T, Krebs A-S, Engilberge S, Varma N, Guixà-González R, et al.
    Chimeric single α-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology
    Structure. 2022; 30(1): 95-106. https://doi.org/10.1016/j.str.2021.09.002
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2021

  • Challa K, Seebacher J, Gasser SM
    Sucrose gradient chromatin enrichment for quantitative proteomics analysis in budding yeast
    STAR Protocols. 2021; 2(4): 100825 (16 pp.). https://doi.org/10.1016/j.xpro.2021.100825
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  • Latychevskaia T, Haigh SJ, Novoselov KS
    Holographic convergent electron beam diffraction (CBED) imaging of two-dimensional crystals
    In: Novoselov KS, Wee ATS, Arramel, eds. Molecular interactions on two-dimensional materials. Singapore: World Scientific Publishing Company; 2021:303-331. https://doi.org/10.1142/9789811247859_0009
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  • Zhang L, Müller Gubler EA, Tai C-W, Kondracki Ł, Sommer H, Novák P, et al.
    Elucidating the humidity-induced degradation of Ni-Rich layered cathodes for Li-ion batteries
    ACS Applied Materials and Interfaces. 2021; 14(11): 13240-13249. https://doi.org/10.1021/acsami.1c23128
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  • Thakkar P, Guzenko VA, Lu P-H, Dunin-Borkowski RE, Abrahams JP, Tsujino S
    Voltage-controlled three-electron-beam interference by a three-element Boersch phase shifter with top and bottom shielding electrodes
    In: Purcell S, Mazellier J-P, eds. 2021 34th international vacuum nanoelectronics conference (IVNC). International conference on vacuum nanoelectronics (IVNC). sine loco: IEEE; 2021:21299961 (2 pp.). https://doi.org/10.1109/IVNC52431.2021.9600711
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  • Kepa MW, Tomizaki T, Tsujino S
    Development of on-demand sample loading of ultrasound acoustic levitators by focused acoustic radiation
    In: IEEE international ultrasonics symposium (IUS 2021). Danvers, MA: IEEE; 2021:(3 pp.). https://doi.org/10.1109/IUS52206.2021.9593735
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  • Gomes CM, Hoyer W, Luo J
    Editorial: the biochemistry of amyloids in neurodegenerative diseases, volume I
    Frontiers in Neuroscience. 2021; 15: 819481 (2 pp.). https://doi.org/10.3389/fnins.2021.819481
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  • Romantini N, Alam S, Dobitz S, Spillmann M, De Foresta M, Schibli R, et al.
    Exploring the signaling space of a GPCR using bivalent ligands with a rigid oligoproline backbone
    Proceedings of the National Academy of Sciences of the United States of America PNAS. 2021; 118(48): e2108776118 (8 pp.). https://doi.org/10.1073/pnas.2108776118
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  • Latychevskaia T, Cassidy C, Shintake T
    Bragg holography of nano-crystals
    Ultramicroscopy. 2021; 230: 113376 (8 pp.). https://doi.org/10.1016/j.ultramic.2021.113376
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  • Venkatachalapathy S, Jokhun DS, Andhari M, Shivashankar GV
    Single cell imaging-based chromatin biomarkers for tumor progression
    Scientific Reports. 2021; 11(1): 23041 (14 pp.). https://doi.org/10.1038/s41598-021-02441-6
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  • Luo J, Wang H, Wu J, Romankov V, Daffé N, Dreiser J
    Amyloid-beta–copper interaction studied by simultaneous nitrogen K and copper L2,3-edge soft X-ray absorption spectroscopy
    iScience. 2021; 24(12): 103465 (11 pp.). https://doi.org/10.1016/j.isci.2021.103465
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  • Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, et al.
    Whole-body integration of gene expression and single-cell morphology
    Cell. 2021; 184(18): 4819-4837. https://doi.org/10.1016/j.cell.2021.07.017
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  • Prasada Rao HBD, Sato T, Challa K, Fujita Y, Shinohara M, Shinohara A
    Phosphorylation of luminal region of the SUN-domain protein Mps3 promotes nuclear envelope localization during meiosis
    eLife. 2021; 10: e63119 (29 pp.). https://doi.org/10.7554/eLife.63119
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  • Cvjetinović Đ, Janković D, Milanović Z, Mirković M, Petrović J, Prijović Ž, et al.
    177Lu–labeled micro liposomes as a potential radiosynoviorthesis therapeutic agent
    International Journal of Pharmaceutics. 2021; 608: 121106 (10 pp.). https://doi.org/10.1016/j.ijpharm.2021.121106
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  • Tran HT, Lucas MS, Ishikawa T, Shahmoradian SH, Padeste C
    A compartmentalized neuronal cell-culture platform compatible with cryo-fixation by high-pressure freezing for ultrastructural imaging
    Frontiers in Neuroscience. 2021; 15: 726763 (15 pp.). https://doi.org/10.3389/fnins.2021.726763
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  • Panneels V, Diaz A, Imsand C, Guizar-Sicairos M, Müller E, Bittermann AG, et al.
    Imaging of retina cellular and subcellular structures using ptychographic hard X-ray tomography
    Journal of Cell Science. 2021; 134(19): jcs258561 (8 pp.). https://doi.org/10.1242/jcs.258561
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  • Wu J, Blum TB, Farrell DP, DiMaio F, Abrahams JP, Luo J
    Cryo-electron microscopy imaging of Alzheimer's amyloid-beta 42 oligomer displayed on a functionally and structurally relevant scaffold
    Angewandte Chemie International Edition. 2021; 60(34): 18680-18687. https://doi.org/10.1002/anie.202104497
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  • Martiel I, Beale JH, Karpik A, Huang C-Y, Vera L, Olieric N, et al.
    Versatile microporous polymer-based supports for serial macromolecular crystallography
    Acta Crystallographica Section D: Structural Biology. 2021; 77(9): 1153-1167. https://doi.org/10.1107/S2059798321007324
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  • Latychevskaia T
    Three-dimensional structure from single two-dimensional diffraction intensity measurement
    Physical Review Letters. 2021; 127(6): 063601 (6 pp.). https://doi.org/10.1103/PhysRevLett.127.063601
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  • Galaz-Montoya JG, Shahmoradian SH, Shen K, Frydman J, Chiu W
    Cryo-electron tomography provides topological insights into mutant huntingtin exon 1 and polyQ aggregates
    Communications Biology. 2021; 4(1): 849 (9 pp.). https://doi.org/10.1038/s42003-021-02360-2
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  • Latychevskaia T, Zan R, Morozov S, Novoselov KS
    Symmetry of diffraction patterns of two-dimensional crystal structures
    Ultramicroscopy. 2021; 228: 113336 (5 pp.). https://doi.org/10.1016/j.ultramic.2021.113336
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  • Latychevskaia T
    Phase retrieval methods applied to coherent imaging
    In: Hÿtch M, Hawkes PW, eds. Advances in imaging and electron physics. sine loco: Elsevier; 2021:1-62. https://doi.org/10.1016/bs.aiep.2021.04.001
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  • Yamamoto R, Hwang J, Ishikawa T, Kon T, Sale WS
    Composition and function of ciliary inner-dynein-arm subunits studied in Chlamydomonas reinhardtii
    Cytoskeleton. 2021; 78(3): 77-96. https://doi.org/10.1002/cm.21662
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  • Latychevskaia T
    Wavefront modulation and beam shaping into arbitrary three-dimensional intensity distributions
    Photonics. 2021; 8(6): 179 (10 pp.). https://doi.org/10.3390/photonics8060179
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  • Marelli E, Gazquez J, Poghosyan E, Müller E, Gawryluk DJ, Pomjakushina E, et al.
    Correlation between oxygen vacancies and oxygen evolution reaction activity for a model electrode: PrBaCo2O5+δ
    Angewandte Chemie International Edition. 2021; 60(26): 14609-14619. https://doi.org/10.1002/anie.202103151
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  • Blum TB, Housset D, Clabbers MTB, van Genderen E, Bacia-Verloop M, Zander U, et al.
    Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals
    Acta Crystallographica Section D: Structural Biology. 2021; 77: 75-85. https://doi.org/10.1107/S2059798320014540
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  • Kutomi O, Yamamoto R, Hirose K, Mizuno K, Nakagiri Y, Imai H, et al.
    A dynein-associated photoreceptor protein prevents ciliary acclimation to blue light
    Science Advances. 2021; 7(9): eabf3621 (12 pp.). https://doi.org/10.1126/sciadv.abf3621
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  • De Leo MG, Berger P, Mayer A
    WIPI1 promotes fission of endosomal transport carriers and formation of autophagosomes through distinct mechanisms
    Autophagy. 2021; 17(11): 3644-3670. https://doi.org/10.1080/15548627.2021.1886830
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  • Ghanbarzadeh Nodehi S, Shivashankar GV, Prost J, Mohammad-Rafiee F
    The characteristics of nuclear membrane fluctuations in stem cells
    Journal of the Royal Society Interface. 2021; 18(176): 20201010 (9 pp.). https://doi.org/10.1098/rsif.2020.1010
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  • Latychevskaia T, Haigh SJ, Novoselov KS
    Holographic convergent electron beam diffraction (CBED) imaging of two-dimensional crystals
    Surface Review and Letters. 2021; 28(8): 2140001 (15 pp.). https://doi.org/10.1142/S0218625X21400011
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  • Xiao X, Willemse J, Voskamp P, Li X, Prota AE, Lamers M, et al.
    Ectopic positioning of the cell division plane is associated with single amino acid substitutions in the FtsZ-recruiting SsgB in Streptomyces
    Open Biology. 2021; 11(2): 200409 (14 pp.). https://doi.org/10.1098/rsob.200409
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  • Yang KD, Belyaeva A, Venkatachalapathy S, Damodaran K, Katcoff A, Radhakrishnan A, et al.
    Multi-domain translation between single-cell imaging and sequencing data using autoencoders
    Nature Communications. 2021; 12(1): 31 (10 pp.). https://doi.org/10.1038/s41467-020-20249-2
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  • Belyaeva A, Cammarata L, Radhakrishnan A, Squires C, Yang KD, Shivashankar GV, et al.
    Causal network models of SARS-CoV-2 expression and aging to identify candidates for drug repurposing
    Nature Communications. 2021; 12(1): 1024 (13 pp.). https://doi.org/10.1038/s41467-021-21056-z
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  • Nitzsche A, Pietilä R, Love DT, Testini C, Ninchoji T, Smith RO, et al.
    Paladin is a phosphoinositide phosphatase regulating endosomal VEGFR2 signalling and angiogenesis
    EMBO Reports. 2021; 22(2): e5021 (16 pp.). https://doi.org/10.15252/embr.202050218
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  • Wu J, Yin X, Ye H, Gao Z, Li H
    Structure relationship of metalloporphyrins in inhibiting the aggregation of hIAPP
    International Journal of Biological Macromolecules. 2021; 167: 141-150. https://doi.org/10.1016/j.ijbiomac.2020.11.161
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  • Uhler C, Shivashankar GV
    Mechanogenomic coupling of lung tissue stiffness, EMT and coronavirus pathogenicity
    Current Opinion in Solid State and Materials Science. 2021; 25(1): 100874 (4 pp.). https://doi.org/10.1016/j.cossms.2020.100874
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  • Wang H, Lallemang M, Hermann B, Wallin C, Loch R, Blanc A, et al.
    ATP impedes the inhibitory effect of Hsp90 on Aβ40 fibrillation
    Journal of Molecular Biology. 2021; 433(2): 166717 (16 pp.). https://doi.org/10.1016/j.jmb.2020.11.016
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