******************************************************************************** ******************************************************************************** **************** ********************* **************** Documentation for TREOR90 ********************* **************** ********************* ******************************************************************************** ******************************************************************************** PROGRAM AUTHOR - P. E. Werner. TO RUN TREOR : Simply type "treor", and you will be prompted for the name of the input file, the output file and a condensed output file. These should be input in the form "filename.inp", "filename.out" and "filename.con", respectively. In most cases, all the useful information is carried by condensed output file, but in certain awkward cases it may be instructive to consult the full ".out" file. An example input data file "treor90.inp" is available in the current directory. See the following original documentation for full details ... eGJJ COMMENT---SEE RULES 1, 2, 5, 9, 10, AND 11. ----------------------------------------------------------------------- C T R E O R T R E O R T R E O R T R E O R C C C TTTTTTT RRRR EEEEEE OOOOO RRRR 99999 000000 C T R R E O O R R 9 9 0 00 C T R R E O O R R 9 9 0 0 0 C T RRRR EEEEEE O O RRRR 999999 0 0 0 C T R R E O O R R 9 0 0 0 C T R R E O O R R 9 00 0 C T R R EEEEEE OOOOO R R 9 000000 C C C JANUARY 1990 C OBS. This is a VAX version....i.e. the subroutines ORTAL, C MAEG and COUNT can not be vectorized. C C 1) Dominant zone test is added for the orthorhombic symmetry. C 2) Dominant zone test is added for the triclinic symmetry. C 3) Higher order lines among the first seven lines (used in the C base line sets) are automatically excluded from the trial C phase of the calculations. C 4) If a monoclinic or triclinic solution is found the program C will end with a unit cell reduction followed by a conversion C of the reduced cell to a conventional cell according to the C metric symmetry. The reduction should be valid unless systematic C extinctions are found in the trial cell. C 5) If a satisfactory solution is found, only the condensed output C file is needed. It contains all relevant information and only C one indexed list. C 6) The general output list (that is normally not needed, cf. 5) C will only list trials where M20 (or Mxx if less lines are C available) is 6 or more and not more than 3 lines among the C first 20 (or xx) lines are unindexed. C 7) If the keyword VOL is given with a negative sign all symmetries C are tested until a final solution is found (--if possible). C This option should only be used on fast computers. C It should NOT be used on a PC (cf. 13 below). C 8) An algoritm for successive reduction of trial-cell volumes is C used in monoclinic and triclinic tests if a negative VOL is C given. It is based on the input cell volume limit and the number C of trial cells found with IQ (see keyword IQ) or more than IQ C indexable lines. C 9) It is strongly recommended to give only the first (well checked C and accurately measured) 25 lines in the diffraction data C list (See LINE SET TWO ). C 10) It is expected that more than 95 per cent of monoclinic and C higher symmetry patterns and probably more than 50 per cent C of triclinic patterns will be indexed presupposed the data C quality is high (i.e. average differences between calculated C and observed diffraction angles less than 0.02 deg. and also C the weak lines included in the data). The experience of triclinic C patterns is limited however. C 11) Obs. It is important to check cubic, tetragonal and hexagonal C solutions by a second run with KS=0 and THS=0 (See key-word C list.) Do not trust cubic, tetragonal or hexagonal solutions C without an orthorhombic test. C 12) The reason for testing the symmetries in correct order (from C cubic to triclinic) and to START the orthrhombic, monoclinic C and triclinic tests with dominant zone tests is that by this C procedure false solutions are effectively avoided. C 13) Vectorization of the subroutines ORTAL, MAEG and COUNT is C essential in order to reduce the computing times on a C CONVEX 210. For a normal run on CONVEX only the keywords C CHOICE=X, (see key-word list) and C VOL=-2000, C END* C should be given after the diffraction data list. C Computing times of more than 1 minute is rare for monoclinic C or higher symmetries. Computing times of more than 5 minutes C for a triclinic pattern has not yet been found. C For a VAX computing times may be more than 50 times longer. C The source code for VAX is not exactly the same as for CONVEX. C 14) The input format for LINE SET TWO (see below) is changed in C agreement with the output format of the diffraction data file C from the Guinier-Hagg film scanner program SCANPI (at Stockholm C University). The change is mainly of interest for output C print of intensities. C 15) The original Key-word instructions given below are relevant C as long as a positive VOL parameter is given. C 16) If VOL is given a negative value (see 13 above) the following C key-words are fixed: MONO=135 and MONOSET=7. C Other key-words may be used as in the description below. C 17) On the output lists C M-TEST= xx UNINDEXED IN THE TEST= y C usually means that xx is identical with M(20) and y is the number C of unindexed lines whithin the first 20 lines (i.e. used for the C MERIT test). C If less than 20 lines are available xx and y refer to the number C of lines used. C C C C NOVEMBER 1988 C C 29 11 88 C C C TRIAL AND ERROR PROGRAM FOR INDEXING OF UNKNOWN POWDER PATTERNS C C CUBIC-TETRAGONAL-HEXAGONAL-ORTHORHOMBIC-MONOCLINIC-TRICLINIC SYMM. C C C VERSION 2 1/9-75 = VERSION 26/4 PLUS C C DENS,EDENS AND MOLW. SEE KEYWORD LIST BELOW. C C VERSION 3 8/5-80 NEW OUTPUT FORM C C VERSION 4 2/10-84 = VERSION 3 PLUS C C THE FOLLOWING NEW OPTIONS.... C C 1. IDIV. SEE KEYWORD IDIV BELOW. C 2. MONOCLINIC (H20)-TEST C REF. SMITH,G.S. AND KAHARA,E J.APPL.CRYST 8(1975)681 C 3. SHORT. SEE KEYWORD SHORT BELOW. C SHORT AXIS TEST. (INDEXING OF DOMINANT ZONES) C 4. TRIC. SEE KEYWORD TRIC BELOW. C INDEXING OF TRICLINIC PATTERNS. C C THE SOURCE CODE HAS BEEN IMPROVED IN ORDER TO DECREASE THE CPU-TIMES C IN SEPTEMBER 1988. THE CHANGES HAVE NO INFLUENCE ON INPUT OR OUTPUT C FROM THE PROGRAM, BUT CPU-TIME REDUCTIONS OF 20-50 PER CENT HAVE BEEN C OBSERVED. C C VERSION 5. (=VERSION NOVEMBER 1988) 29/11 1988 C C DOMINANT ZONE TEST INTRODUCED ALSO FOR ORTHOROMBIC SYMMETRY. C IN VERSION 4 HIGH SYMMETRY SHORT AXIS SOLUTIONS WERE ONLY FOUND C INDIRECTLY FROM THE MONOCLINIC TESTS. C CONDENSED OUTPUT FILE. C A COMPLETE LIST OF OBSERVED AND CALCULATED LINES IS ONLY GIVEN FOR C THE SOLUTION (IF IT IS FOUND) I.E. FOR AN INDEXING WHERE THE C STOP LIMITS (SEE KEYWORDS MERIT AND NIX) ARE FULFILLED. C NORMALLY ONLY THE CONDENSED OUTPUT FILE IS NEEDED. C IF THE STOP LIMITS ARE FULFILLED THE UNIT CELL IS REFINED THREE C CYCLES MORE. C ONLY THE FIRST PART OF THE DIFFERENCE ANALYSIS TABLE IS PRINTED C IF NO SOLUTION IS FOUND. (USUALLY IT IS NOT NEEDED AS YOU SHOULD C NORMALLY RERUN THE PROBLEM AFTER MODIFICATIONS OF THE INPUT DATA.) C C C C C IF YOU HAVE ANY QUESTIONS ABOUT THE PROGRAM, WRITE TO THE PROGRAM C AUTHOR.. C C P.-E.WERNER C DEPT. OF STRUCTURAL CHEMISTRY C ARRHENIUS LABORATORY C UNIVERSITY OF STOCKHOLM C S-106 91 STOCKHOLM, SWEDEN C C C C TEL: 08 / 16 23 93 C C C C C IT IS BELIEVED, HOWEVER, THAT THE FOLLOWING DOCUMENTATION SHOULD C BE SUFFICIENT FOR ALL CAREFUL READERS. C C GOOD LUCK! C C C C R E F E R E N C E S C C C BASIC PRINCIPLES. WERNER,P.-E.,Z.KRIST. 120(1964)375-387 C C TREOR, A SEMI-EXHAUSTIVE TRIAL-AND-ERROR POWDER INDEXING PROGRAM C FOR ALL SYMMETRIES. WERNER,P.-E.,ERIKSSON,L. AND WESTDAHL,M., C J.APPL.CRYSTALLOGR. 18(1985)367-370. C C C REFINEMENT OF UNIT CELL. WERNER,P.-E.,ARKIV KEMI 31(1969) 513-516. C C FIGURE OF MERIT. DE WOLFF,P.M.,J.APPL.CRYSTALLOGR. 1(1968)108-113. C C GEOMETRICAL AMBIGUITIES. MIGHELL,A.D. AND SANTORO,A., J.APPL. C CRYSTALLOGR. 8(1975)372. C C C G E N E R A L C O M M E N T S C C C THIS IS A GENERAL TRIAL-AND-ERROR INDEXING PROGRAM FOR X-RAY C DIFFRACTION POWDER PATTERNS.(I.E. ALL SYMMETRIES INCLUDED) C C IN ORDER TO REDUCE COMPUTING TIMES ON COMPUTERS WITHOUT HARDWARE C FLOATING POINT PROCESSORS, PARTS OF THE PROGRAM HAS BEEN WRITTEN C FOR INTEGER CALCULATIONS. C C C THE PARAMETERS GIVEN AS NORMAL VALUES IN THE KEYWORD LIST BELOW SHOULD C BE CONSIDERED AS AN IMPORTANT PART OF THE PROGRAM. THEY ARE BASED ON C EXPERIENCE FROM A GREAT NUMBER OF SUCCESSFUL RUNS ON STRUCTURES C CONFIRMED BY SINGLE CRYSTAL DATA. THE PARAMETERS VOL AND CEM, HOWEVER, C SHOULD BE SELECTED FOR THE ACTUAL DATA SET AND THE SYMMETRY TRIED. C ...FOR A MONOCLINIC TRIAL THE PARAMETER MONO MUST BE NON-ZERO. C ...FOR A TRICLINIC TRIAL THE PARAMETER TRIC MUST BE 1. C C MOST OF THE POWDER PATTERNS USED HAVE BEEN OBTAINED BY FOCUSING C GUINIER-HAGG CAMERAS. THE PHOTOGRAPHS HAVE BEEN MEASURED BY.. C 1. THE METHOD DESCRIBED BY HAEGG,G. REV.SCI.INSTR. C 18(1947)371 AND WESTMAN,S AND MAGNELI,A. ACTA.CHEM.SCAND. 11(1957)1587 C 2. THE METHOD DESCRIBED BY MALMROS,G AND WERNER,P-E. C ACTA.CHEM.SCAND. 27(1973)493 C 3. THE FILMSCANNER SYSTEM SCANPI (WRITTEN BY P.-E. C WERNER FOR GUINIER SCANNER LS18.) C C THE PROGRAM HAS ALSO BEEN TESTED ON A LARGE NUMBER OF NBS-DATA C (JCPDS-DATA) C C THE ACCURATE DATA OBTAINED BY NBS (-NATIONAL BUREAU OF STANDARDS-) C IS CLEARLY SUFFICIENT FOR SUCCESSFUL POWDER INDEXING (IN SPITE OF THE C FACT THAT THEY ARE NOW USUALLY OBTAINED BY POWDER DIFFRACTOMETERS) C THE FOLLOWING CITATIONS, HOWEVER, SHOULD BE EMPHASIZED.... C C "THE PARAMOUNT IMPORTANCE OF RESOLUTION FOR INDEXING WORK EXPLAINS C THE HIGH SUCCESS RATE FOR FOCUSSING CAMERA DATA, ESPECIALLY FROM C GUINIER-HAGG INSTRUMENTS, WHOSE RESOLUTION CAN ONLY BE DESCRIBED C AS SUPERB. IT IS RATHER LESS COMMON (AND CONSIDERABLY MORE EXPEN- C SIVE) TO OBTAIN AS GOOD RESOLUTION WITH DIFFRACTOMETER DATA." C C "POWDER INDEXING IS NOT LIKE STRUCTURE ANALYSIS, WHICH WORKS WELL C ON GOOD DATA, AND WILL USUALLY GET BY ON POOR DATA GIVEN A LITTLE C MORE TIME AND ATTENTION. POWDER INDEXING WORKS BEAUTIFULLY ON C GOOD DATA, BUT WITH POOR DATA IT WILL USUALLY NOT WORK AT ALL." C C REF:DATA ACCURACY FOR POWDER INDEXING. SHIRLEY,R. NBS SPEC.PUBL. C 567 (1980) P.370 AND P.362 RESPECTIVELY. C C WARNING. A ZERO POINT ERROR IS MUCH MORE SERIOUS THAN STATISTICAL C ERRORS OF THE SAME MAGNITUDE. C C SIGMA(TWO THETA) SHOULD BE LESS THAN 0.02 DEG. C C C C ******************************************* C * DO NOT WASTE COMPUTER TIME ON BAD DATA. * C ******************************************* C C C AN INDEXING ALGORITHM CANNOT BE STATED RIGOROUSLY BECAUSE OF THE C UNPREDICTABLE DISTRIBUTION OF UNOBSERVED LINES AND THE ERRORS OF C MEASUREMENTS. THEREFORE, IT IS EXPECTED THAT VARIOUS METHODS MAY BE C USEFUL FOR VARIOUS POWDER PATTERNS. FOR EXAMPLE, A MULTITUDE OF C NON-SYSTEMATIC EXTINCTIONS MAY NOT APPRECIABLY AFFECT THE POWER OF C TRIAL-AND-ERROR METHODS. C C THE LEAST-SQUARES REFINEMENT OF THE UNIT CELL DIMENSIONS SHOULD NORMALLY C NOT BE CONSIDERED AS AN ULTIMATE ONE. THE MAIN PURPOSE OF THE PROGRAM C IS TO FIND THE UNIT CELL. (CF. REF./REFINEMENT OF UNIT CELL/ GIVEN ABOVE) C C A LIMITED NUMBER OF NONSENSE CELLS MAY BE PRINTED ON THE OUTPUT LIST. C YOU SHOULD LOOK FOR MAX. FIGURE OF MERIT AND MIN. NUMBER OF UNINDEXED C LINES. C ... WARNING!....YOU SHOULD NOT ACCEPT UNINDEXED LINES UNLESS C YOU ARE ABLE TO EXPLAIN THEM. ON THE OTHER HAND YOU SHOULD NOT PUT IN C UNCERTAIN (DOUBTFUL) LINES IN THIS PROGRAM. THEY MAY BE TESTED LATER C BY ANY REFINEMENT PROGRAM (EX. PROGRAM PIRUM. SEE REF. ABOVE) C C C C C I N P U T D A T A C C C LINE ONE. TITLE C C ANY TEXT IN COL. 2-80 C C LINE SET TWO. FORMAT(F16.6,3X,A4) C SQ (=SINE SQUARE THETA) IN THE FIELD F16.6 AND C INTENSITY INFORMATION IN THE A4 FIELD. C THE INTENSITY IN THE A4 FIELD IS OPTIONAL. (IT C IS NEVER USED BY THE INDEXING PROGRAM.) C IT IS ALSO POSSIBLE TO USE OTHER TYPES OF INPUT C DATA IN THE F16.6 FIELD. (AVOID COL.1) SEE KEYWORD C CHOICE BELOW. C THE SQ DATA MUST BE GIVEN IN ORDER, STARTING WITH C THE LOW ORDER LINES. C GENERALLY THE FIRST 20-30 LINES SHOULD BE USED. C REMAINING LINES MAY BE USED IN LATER FINAL C REFINEMENTS.(PROGRAM PIRUM) C C C STOP LINE FOR LINE SET TWO IS A BLANK LINE (OR A NEGATIVE SQ) C C C LINE SET THREE. GENERAL INSTRUCTIONS. C C ALL PARAMETERS IN LINE SET THREE HAVE PRESET VALUES. C A PRESET VALUE IS DENOTED 'NORMAL VALUE' BELOW. C ANY 'NORMAL VALUE' MAY BE CHANGED IN THE FOLLOWING WAY: C C KEYWORD1=VALUE1, KEYWORD2 = VALUE2, C KEYWORD3=VALUE3, ......., END* C C 1. THE KEYWORDS (OBS. CAPITAL LETTERS) ARE LISTED BELOW C 2. YOU MUST NOT FORGET = C 3. THE VALUE MAY BE GIVEN AS INTEGER OR REAL. (FREE FORMAT) C 4. YOU MUST NOT FORGET , (---THE COMMA) C C YOU MAY USE ARBITRARY POSITIONS ON THE LINES. C ALL BLANKS ARE IRRELEVANT. C THE NUMBER OF LINES IS ARBITRARY. YOU MAY GIVE ONE OR MORE PARAMETER C ON EACH LINE. C C LINE SET THREE MUST END WITH THE KEYWORD END* (OBS. ASTERISK) C C C C S T R A T E G Y Obs. For TREOR90 the automatic procedure by C using a negative VOL parameter may be used...See the comments C on the top of this list. Then only parameters such as MERIT, C NIX, IDIV and in exeptional cases D1, SSQTL and/or D2 may be C changed if indexing is not successful. Usually the main problem, C however, is the quality of your diffraction data. C C C C THE STANDARD PROCEDURE IS TO START WITH THE HIGH SYMMETRIES: C CUBIC, TETRAGONAL, HEXAGONAL AND ORTHORHOMBIC..(IN ONE JOB) C NEXT THE MONOCLINIC SYMMETRY SHOULD BE TRIED. MORE THAN ONE JOB MAY C BE NEEDED..SUCCESSIVELY INCREASING THE NUMBER OF BASE LINE SETS, C AND CELL VOLUME (SEE KEYWORDS: VOL, CEM AND MONOSET ) C C IF THE FORMULA WEIGHT AND DENSITY ARE KNOWN, THEY SHOULD BE USED C (SEE KEYWORDS: DENS, EDENS AND MOLW ). THE CPU-TIME NEEDED WILL C THEN USUALLY BE STRONGLY REDUCED. (UNFORTUNATELY THEY ARE USUALLY C NOT WELL KNOWN AND THEREFORE THEY HAVE NOT BEEN USED VERY MUCH C IN OUR TEST RUNS.) C C C C C C LINE SET THREE EXAMPLES: C C EXAMPLE 1. NEXT LINE (EXCEPT C IN COL. 1) REPRESENTS A LINE SET THREE. C END* C C THIS IS A NORMAL FIRST RUN. (CUBIC,TETRAGONAL,HEXAGONAL AND ORTHORHOMBIC C SYMMETRIES ARE TRIED) C IT MAY BE RECOMMENDED TO TRY A SMALLER VOL LIMIT EVEN IF A SOLUTION C WITH ACCEPTABLE FIGURE OF MERIT HAS BEEN OBTAINED. SOMETIMES IT IS C DIFFICULT TO SEE THE NECESSARY TRANSFORMATIONS BETWEEN A HIGH SYMMETRY C UNIT CELL OF TOO LARGE DIMENSIONS AND THE PRIMITIVE ONE. C C C EXAMPLE 2. NEXT TWO LINES (NOT C IN COL. 1) IS A LINE SET THREE. C KS=0,THS=0,OS1=0, C CEM=20, V O L = 1000 , MONO=130,END* C C THIS IS A TYPICAL FIRST MONOCLINIC TRIAL.(SEE KEYWORD MONO) C NOTE THAT IT IS IRRELEVANT IF YOU GIVE 'CEM=20.0' OR 'CEM=20' ETC. C C C C EXAMPLE 3. NEXT....ETC. C KS=0,THS=0,OS1=0, C CEM=20, VOL=1500, MONO=130, END* C C IF EXAMPLE 2 IS UNSUCCESSFUL YOU MAY INCREASE THE VOL PARAMETER TO 1500 C C C C EXAMPLE 4. NEXT....ETC. C KS=0,THS=0,OS1=0,CEM=20, C MONOSET=7,LIST=1, C DENS=3.123,EDENS=0.2,MOLW=234, C END* C C IF YOU HAVE ANY POSSIBILITY TO PUT IN DENSITY AND FORMULA WEIGHT, C THE COMPUTING TIME WILL BE MUCH REDUCED. THIS IS ALSO STRONGLY C RECOMMENDED IF YOU EXPECT THAT THE LATTICE CONTAINS A DOMINANT C ZONE I.E. IF IN A TEST RUN YOU GET A LARGE NUMBER OF TRIAL CELLS C WHEN USING THE KEYWORD SHORT=1. LOOK AT THE END OF THE OUTPUT LIST. C C C C C EXAMPLE 5. NEXT....ETC. C CEM=20,VOL=700,TRIC=1,MERIT=20,END* C C THIS IS A TRICLINIC TEST (OBS. TIMECONSUMING)(SEE. KEYWORD TRIC) C IT IS RECOMMENDED TO ASK FOR A DE WOLFF FIGURE OF MERIT OF 20 C FOR A TRICLINIC CELL. C C C C C THE EXAMPLES GIVEN ABOVE ILLUSTRATE A STEP-WISE STRATEGY FOR C INDEXING. HOWEVER, THE VOL PARAMETER MAY BE ESTIMATED FROM THE C D-VALUE OF THE 20TH LINE. (CF. KEYWORD TRIC) C WARNING. IF THE TRUE UNIT CELL HAS A SMALL VOLUME, FOR EXAMPLE C 250 A**3 AND VOL=2000 IS USED, THE CORRECT SOLUTION MAY C BE LOST IN THE TRIAL PROCESS. THE REASON IS THAT C A GREAT NUMBER OF LARGE TRIAL CELLS MAY ERRONEOUSLY C INDEX MORE LINES THAN THE CORRECT (BUT NOT REFINED) CELL. C WARNING. ESTIMATION OF THE UNIT CELL VOLUME FROM THE RELATIONS C VOL(MONOCLINIC CELL)= 20*D(20)**3 (D(20)=THE D-VALUE OF THE C 20TH LINE) AND VOL(ORTHORHOMBIC)=31*D(20)**3 ARE MUCH C LESS RELIABLE THAN THE CORRESPONDING RELATION FOR C THE TRICLINIC SYMMETRY. C VOL(TRICLINIC)=13.39*D(20)**3 C I.E. TRICLINIC STRUCTURES HAVE NO SYSTEMATIC EXTINCTIONS! C FOR STRUCTURES CONTAINING ATOMS WITH GREAT DIFFERENCES IN C SCATTERING FACTORS (EG. METAL-ORGANIC STRUCTURES) THE C GENERAL RULE MAY FAIL ALSO IN A TRICLINIC CASE. C REF: SMITH,G.S. J.APPL.CRYST 10(1977)252 C C C IT IS USUALLY EASY TO PUT IN A KNOWN (OR EXPECTED) CELL EDGE INTO C THE PROGRAM. EXAMPLE: A MONOCLINIC TRIAL IS WANTED, WITH THE RESTRICTION C THAT ONE CELL AXIS IS X.XXX A. USUALLY THIS D-VALUE (IF KEYWORD CHOICE=4 C IS USED) OR THE CORRESPONDING SINE SQUARE THETA (IF CHOICE=0, DEFAULT) C CAN BE INCLUDED IN LINE SET TWO. ASSUME IT WILL BE PUT IN AS LINE C NUMBER TWO (-THE LINES MUST BE GIVEN IN THE ORDER OF INCREASING BRAGG- C ANGLES-). THEN YOU ONLY NEED TO PUT IN.... C ...MH2=1, MK2=1, ML2=0, MS2=1,.....(SEE THE KEYWORDS) C THEN THE LINE WILL BE USED ONLY AS THE A-AXIS OR (THE UNIQUE) B-AXIS C IN A MONOCLINIC TEST. (IF MH2=0 IS USED, IT WILL ONLY BE TESTED AS C B-AXIS ETC.) C CONCLUSION: IT IS USUALLY VERY EASY TO PUT IN PRIOR KNOWLEDGE AND C CONSTRAINTS -FOR EXAMPLE DENSITY- INTO THE PROGRAM. C (THIS STATEMENT IS MADE BECAUSE OF SOME MISUNDERSTANDINGS THAT HAS C APPEARED IN THE LITERATURE) C C C C C H O W T O I N T E R P R E T T H E O U T P U T. C C AS IN ALL GOOD DETECTIVE STORIES, THE SOLUTION OF THE PROBLEM C WILL USUALLY BE GIVEN ON THE LAST PAGE...... C I.E. THE OUTPUT LIST WILL BE INTERRUPTED AS SOON AS A UNIT CELL C THAT WILL SATISFY THE CRITERIA SET BY THE KEYWORDS NIX AND MERIT C ARE FULFILLED. ALTHOUGH THE TRIAL CELLS WILL BE ORDERED ACCORDING C TO PRIORITY RULES (MAX. NUMBER OF INDEXABLE LINES AND MIN. VOLUMES) C IT IS NOT A GUARANTEE THAT THE FIRST REFINED CELL GIVES A CORRECT C SOLUTION. C C THE MAIN RULE IS THAT IF ALL THE FIRST TWENTY LINES ARE INDEXED C AND THE DE WOLFF FIGURE OF MERIT M(20) IS GREATER THAN 9, THEN C THE INDEXING PROBLEM IS IN PRINCIPLE SOLVED. THIS DOES NOT MEAN C THAT THE CELL IS REDUCED, THAT A CELL AXIS MAY NOT BE DOUBLE ETC., C C C C UNIT CELLS OBTAINED BY THIS PROGRAM SHOULD BE CAREFULLY CHECKED... C C A. IF THE DE WOLFF FIGURE OF MERIT M(20) IS LESS THAN 10 OR MORE C THAN ONE LINE IS UNINDEXED WITHIN THE 20 FIRST OBSERVED LINES, C THE SOLUTION IS PROBABLY MEANINGLESS. --TRY NEXT STEP IN THE C STRATEGY (SEE ABOVE) C C B. FOR COMMON FACTORS IN THE QUADRATIC FORMS. C FOR EXAMPLE A TETRAGONAL PATTERN MAY HAVE C H*H + K*K = 5*N I.E. THE A-AXIS IS 2.3607 (SQUARE ROOT OF 5) C TIMES SHORTER THAN GIVEN ON THE OUTPUT LIST. C OBVIOUSLY IF FOR EXAMPLE ALL H,K OR L ARE EVEN, THE CORRE- C SPONDING CELL AXIS SHOULD BE DIVIDED BY TWO. THIS MAY OCCUR C IF A TOO LARGE VOL PARAMETER HAS BEEN GIVEN. C C C. IF THE UNIT CELL OBTAINED IS CENTERED, DERIVE A PRIMITIVE CELL. C (COMPUTER PROGRAMS ARE ANNOUNCED FROM NBS..) C (COMPUTER PROGRAM USED AT SU (STOCKHOLM UNIVERSITY): MODCELL) C C D. REDUCE THE PRIMITIVE CELL AND DERIVE THE CONVENTIONAL CELL. C (NBS.. PROGRAM, SEE ABOVE) C (PROGRAM AT SU: REDUCT) C C E. HEXAGONAL AND TETRAGONAL CELLS ARE SOMETIMES INDEXED AS ORTHO- C RHOMBIC. FOR EXAMPLE A = B * 1.7321 I.E. A POSSIBLE HEXAGONAL C CELL. C C F. CHECK FOR GEOMETRICAL AMBIGUITIES. SEE REFERENCE LIST ABOVE. C IT IS ALSO STRONGLY RECOMMENDED TO CHECK CUBIC, TETRAGONAL AND C HEXAGONAL SOLUTIONS BY AN ORTHORHOMBIC TEST. PUT KS=0 AND THS=0 C AND RUN TREOR ONCE AGAIN. THERE ARE TWO REASONS FOR THIS PROCEDURE. C 1. IT MAY HELP YOU TO IDENTIFY GEOMETRICAL AMBIGUITIES. C 2. WE HAVE FOUND THAT SOMETIMES VERY SMALL ORTHORHOMBIC UNIT C CELLS CAN BE INDEXED IN AN ACCEPTABLE WAY (I.E. FULFILL C THE DE WOLFF CRITERIA) BY A LARGER UNIT CELL OF HIGHER C SYMMETRY. ALTHOUGH THE UNIT CELLS ARE SOMETIMES RELATED TO C EACH OTHER, THE RELATIONS ARE OFTEN DIFFICULT TO DISCOVER C AND IT IS THEREFOR VERY CONVENIENT TO LET TREOR DERIVE C BOTH SOLUTIONS. C C G. OBS. THE DE WOLFF FIGURE OF MERITS ARE DERIVED FROM THE ASSUMP- C TION THAT NO SYSTEMATIC EXTINCTIONS OCCURR AND ALL LINES ARE C INDEXED. WARNING. A HIGH FIGURE OF MERIT HAS NO MEANING UNLESS C THE LINES ARE INDEXED. C THE DE WOLFF FIGURE OF MERIT WILL INCREASE IN THE FINAL C REFINEMENTS WHEN SYSTEMATIC EXTINCTIONS (IF THEY EXIST) ARE C TAKEN INTO ACCOUNT. C C H. IF POSSIBLE, USE THE DENSITY AND FORMULA WEIGHT TO CHECK THAT C THE UNIT CELL CONTAINS AN INTEGRAL NUMBER OF FORMULA UNITS. C C I. IF A CELL AXIS IS MORE THAN 20 A....BE VERY SUSPICIOUS! C WE HAVE FOUND THAT THE DE WOLFF FIGURE OF MERIT TEST MAY FAIL C IN SUCH CASES. C C J. IF ONE CELL EDGE IS MUCH SHORTER THAN THE OTHERS..BE SUSPICIOUS! C IT MAY CAUSE A DOMINANT ZONE PROBLEM. THE DE WOLFF FIGURE OF C MERIT TEST MAY FAIL. IF POSSIBLE, PUT IN DENSITY AND FORMULA C WEIGHT (KEYWORDS:DENS,EDENS AND MOLW) AND CHANGE THE PARAMETERS C NIX AND MERIT TO 0 AND 100 RESPECTIVELY. THEN MORE "SOLUTIONS" C MAY BE OBTAINED. C C K. IF A TABLE STARTS WITH....NOT REFINED UNIT CELL... C TWO PARAMETERS ARE PROBABLY ALMOST IDENTICAL (THE SYMMETRY MAY C BE HIGHER) AND THE TRIAL CELL PARAMETERS ARE USED TO PRINT THE C LIST. C C L. IF NO SATISFACTORY SOLUTION (SEE THE KEYWORDS NIX AND MERIT) C ARE FOUND, THE PROGRAM WILL END WITH A TABLE CONTAINING A C DIFFERENCE ANALYSIS. THE PROGRAM IS DESCRIBED IN Z.KRIST 120 C (1964) P.381-382 (WERNER,P.-E.) WHERE IT IS NAMED PROGRAM I1. C THE MOST INTERESTING DIFFERENCES ARE THOSE THAT HAVE HIGH C MULTIPLICITIES (ON THE TOP OF THE LIST) AND ARE NOT TOO SMALL C (TO THE RIGHT ON THE LIST).- IN THE PRESENT STATE OF THE C PROGRAM, THE DIFFERENCE TABLE IS USUALLY NOT NEEDED. IF IT C APPEARS YOU SHOULD USUALLY PROCEED WITH THE NEXT STEP IN THE C STRATEGY LIST. C C M. WHY NOT SOLVE THE CRYSTAL STRUCTURE FROM YOUR POWDER DATA ? C THIS MAY BE THE ULTIMATE WAY TO PROVE THE UNIT CELL. C C C C C C C C K E Y W O R D L I S T C C KEYWORD. NORMAL COMMENT. C VALUE. C C C KH =4 MAX H FOR CUBIC BASE LINE. C KK =4 MAX K FOR CUBIC BASE LINE. C KL =4 MAX L FOR CUBIC BASE LINE. C C OBS. THE PROGRAM WILL ONLY GENERATE H GREATER THAN OR C EQ. TO K GREATER THAN OR EQ. TO L FOR THIS LINE. C C KS =6 MAX H+K+L FOR THIS LINE. C C OBS. IF KS=0 CUBIC TEST OMITTED. C C OBS. THE CUBIC BASE LINES ARE (1) AND (2). C C * * * * * * * * * * * * * * * * * * * * * * * * * * * C C THH =4 MAX H FOR TETRAGONAL AND HEXAGONAL BASE LINES. C THK =4 MAX K FOR TETRAGONAL AND HEXAGONAL BASE LINES. C THL =4 MAX L FOR TETRAGONAL AND HEXAGONAL BASE LINES. C C OBS. THE PROGRAM WILL ONLY GENERATE H GREATER THAN OR C EQ. TO K FOR THESE LINES. C C THS =4 MAX H+K+L FOR THESE LINES. C C OBS. IF THS=0 TETRAGONAL AND HEXAGONAL TESTS OMITTED. C C OBS. THE TETRAGONAL AND HEXAGONAL BASE LINES C ARE (1,2),(1,3) AND (2,3) C C * * * * * * * * * * * * * * * * * * * * * * * * * * * C C OH1 =2 MAX H FOR THE FIRST ORTHORHOMBIC BASE LINE. C OK1 =2 MAX K FOR THE FIRST ORTHORHOMBIC BASE LINE. C OL1 =2 MAX L FOR THE FIRST ORTHORHOMBIC BASE LINE. C C OBS. THE PROGRAM WILL ONLY GENERATE H GREATER THAN OR C EQ. TO K GREATER THAN OR EQ. TO L FOR THIS LINE. C THIS IS ALSO VALID IF THE 'SELECT' PARAMETER C IS USED. (SEE BELOW) C C OS1 =3 MAX H+K+L FOR THIS LINE. C C OBS. IF OS1=0 ORTHORHOMBIC TEST OMITTED. C C OH2 =2 MAX H FOR THE SECOND ORTHORHOMBIC BASE LINE. C OK2 =2 MAX K FOR THE SECOND ORTHORHOMBIC BASE LINE. C OL2 =2 MAX L FOR THE SECOND ORTHORHOMBIC BASE LINE. C OS2 =4 MAX H+K+L FOR THIS LINE. C C OH3 =2 MAX H FOR THE THIRD ORTHORHOMBIC BASE LINE. C OK3 =2 MAX K FOR THE THIRD ORTHORHOMBIC BASE LINE. C OL3 =2 MAX L FOR THE THIRD ORTHORHOMBIC BASE LINE. C OS3 =4 MAX H+K+L FOR THIS LINE. C C OBS. THE ORTHOROMBIC BASE LINES ARE C (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) AND (1,2,6) C C IF THE PARAMETER SELECT=0 C PARAMETER 'SELECT' SEE BELOW. C C * * * * * * * * * * * * * * * * * * * * * * * * * * * C C MH1 =2 MAX ABS(H) FOR THE FIRST MONOCLINIC BASE LINE. C MK1 =2 MAX K FOR THE FIRST MONOCLINIC BASE LINE. C ML1 =2 MAX L FOR THE FIRST MONOCLINIC BASE LINE. C C OBS. THE PROGRAM WILL ONLY GENERATE H GREATER THAN OR C EQ. TO L FOR THIS LINE. C THIS IS ALSO VALID IF THE 'SELECT' PARAMETER C IS USED. (SEE BELOW) C C MS1 =2 MAX ABS(H)+K+L FOR THIS LINE. C THE NORMAL (AND FAST) WAY TO TEST ONE EXPECTED CELL C EDGE PARAMETER IS TO PUT IT IN AS Q NUMBER ONE (CARD C SET TWO) AND SET MH1=1,MK1=1,ML1=0,MS1=1. C C MH2 =2 MAX ABS(H) FOR THE SECOND MONOCLINIC BASE LINE. C MK2 =2 MAX K FOR THE SECOND MONOCLINIC BASE LINE. C ML2 =2 MAX L FOR THE SECOND MONOCLINIC BASE LINE. C MS2 =3 MAX ABS(H)+K+L FOR THIS LINE. C C MH3 =2 MAX ABS(H) FOR THE THIRD MONOCLINIC BASE LINE. C MK3 =2 MAX K FOR THE THIRD MONOCLINIC BASE LINE. C ML3 =2 MAX L FOR THE THIRD MONOCLINIC BASE LINE. C MS3 =3 MAX ABS(H)+K+L FOR THIS LINE. C C MH4 =2 MAX ABS(H) FOR THE FOURTH MONOCLINIC BASE LINE. C MK4 =2 MAX K FOR THE FOURTH MONOCLINIC BASE LINE. C ML4 =2 MAX L FOR THE FOURTH MONOCLINIC BASE LINE. C MS4 =4 MAX ABS(H)+K+L FOR THIS LINE. C C OBS. THE MONOCLINIC BASE LINES ARE C (1,2,3,4) (1,2,3,5) AND (1,2,4,5) C IF THE PARAMETER 'SELECT' IS LESS THAN 6 C C PARAMETER 'SELECT' SEE BELOW. C C C MONOSET =0 THIS PARAMETER MAKES IT POSSIBLE TO USE MORE THAN 3 C SETS OF BASE LINES IN THE MONOCLINIC TRIALS. C IF MONOSET IS: C GREATER THAN 3 THE BASE LINE SET (1,3,4,5) WILL BE USED C GREATER THAN 4 THE BASE LINE SET (1,2,3,6) WILL BE USED C GREATER THAN 5 THE BASE LINE SET (2,3,4,5) WILL BE USED C GREATER THAN 6 THE BASE LINE SET (1,2,3,7) WILL BE USED C THUS MAX 7 BASE LINE SETS CAN BE USED. C C MONOGAM=1 THE BEST 5 TRIAL PARAMETER SETS STORED C (SEE PARAMETER 'IQ') FOR EACH BASE LINE SET WILL BE C REFINED BEFORE NEXT BASE LINE SET IS TRIED. C C IF MONOGAM=0 ALL BASE LINE SETS ARE TRIED BEFORE C ANY REFINEMENT IS PERFORMED. C C THE PARAMETER IS ONLY USED IN THE MONOCLINIC TESTS. C C IT IS RECOMMENDED TO USE MONOGAM=1 BECAUSE A REFINED C CELL PARAMETER SET IS ALWAYS TESTED FOR THE STOP C LIMITS 'MERIT' AND 'NIX'. THUS COMPUTER TIME CAN BE C SAVED. C C MONO =0 MAX BETA ANGLE ALLOWED IN A MONOCLINIC CELL. C OBS. NO MONOCLINIC TEST IF MONO=0 C (SEE ALSO KEYWORD SHORT) C C SHORT =1 SHORT AXIS TEST. C THE PARAMETER IS ONLY VALID FOR MONOCLINIC TESTS. C THE FIRST SIX LINES ARE TESTED FOR THE OCCURRENCE C OF A COMMON ZERO INDEX IN THE SIX FIRST LINES. C IF SHORT=0 NO SHORT AXIS TEST. C IF YOU WANT TO MAKE THIS TEST WITHOUT REPEATING C OTHER MONOCLINIC TESTS YOU MAY GIVE THE PARAMETER C MONO A NEGATIVE SIGN. C C C C * * * * * * * * * * * * * * * * * * * * * * * * * * * C C USE =19 -OR EQ. TO THE NUMBER OF INPUT LINES IF THERE ARE LESS C THAN 19 LINES, C -OR EQ. TO THE NUMBER OF LINES WITH SINE SQUARE(THETAS) C LESS THAN 0.327 C -'USE' IS THE NUMBER OF LINES USED IN THE TRIAL-INDEXING C PART OF THE CALCULATIONS. C C OBS. MAX USE=20 C C OBS. IF YOU WANT TO CHANGE THIS PARAMETER YOU SHOULD C ALSO CHANGE THE PARAMETER IQ. C C IQ =USE-3 THE NUMBER OF INDEXABLE LINES REQUIRED IN THE TRIAL- C INDEXING PROCEDURE IF THE CELL SHOULD BE STORED FOR C EV. LEAST-SQUARES REFINEMENT. C THESE RECIPROCAL CELL PARAMETERS ARE PRINTED IF THE C PARAMETER LIST=1 C C LIST =0 SEE. ABOVE. C C SELECT =0 IF 'SELECT' IS NON ZERO THE ORTHORHOMBIC BASE LINES ARE C (SELECT,1,2) (SELECT,1,3) AND (SELECT,2,3) C C IF 'SELECT' IS GREATER THAN 5 THE MONOCLINIC BASE LINES C ARE (SELECT,1,2,3) (SELECT,1,2,4) AND (SELECT,1,3,4) C C MERIT =10 FIGURE OF MERIT REQUIRED AS STOP LIMIT. C THE FIGURE OF MERIT IS FOR AN ORTHORHOMBIC CELL DEFINED C BY DE WOLFF,P.M., J.APPL.CRYST. 1(1968)108-113. C ( FOR THE CUBIC ,TETRAGONAL AND HEXAGONAL SYMMETRIES C ARE THE DIFFERENT QUADRATIC FORMS AS GIVEN IN C INT. TABL. X-RAY CRYST.(1968) VOL.2 P.109-145 USED IN C THE CALCULATION OF THE NUMBER OF THEORETICAL LINES.) C C OBS. THE FIGURE OF MERIT CALCULATIONS ARE NOT STRICTLY C VALID UNLESS ALL TWENTY FIRST LINES ARE INDEXED. C C C NIX =1 IF A CELL AFTER LEAST SQUARES REFINEMENT HAS A FIGURE C OF MERIT EQ. TO OR GREATER THAN THE PARAMETER 'MERIT' C AND THE NUMBER OF NOT INDEXABLE LINES AMONG THE 'USE' C FIRST LINES ARE LESS THAN OR EQ. TO 'NIX' THE C CALCULATIONS ARE STOPPED. C C OBS. OTHERWISE THE CALCULATIONS WILL END WITH A C DIFFERENCE ANALYSIS (PROGRAM I1. WERNER, P.-E. C Z.KRISTALLOGR. 120(1964)375-378) C C IDIV =1 THE 7 FIRST LINES ARE ADJUSTED BY (EVENTUALLY C OCCURRING) HIGHER ORDER LINES. C IF IDIV=0 NO CORRECTIONS. C USUALLY THE DEFAULT VALUE 1 IS O.K. THERE ARE C EXEPTIONS, HOWEVER. IF INDEXING IS NOT C SUCCESSFUL IT IS RECOMMENDED TO TRY IDIV=0. C C C WAVE =1.5405981 WAVE LENGTH. (IN ANGSTROEM) C AS A RULE ONE SHOULD NEVER CHANGE WAVE FROM 1.5405981. C IF D-VALUES ARE USED IN THE INPUT DATA FILE (SEE. C CHOICE=4) ONE CAN ALWAYS PRETEND THAT WAVE WAS C 1.5405981 A. WAVE IS THEN A FORMAL PARAMETER ONLY C RELATED TO D1, SSQTL AND D2 (SEE BELOW). C C VOL =2000 MAX CELL VOLUME (IN ANGSTROEM**3) C A new option available in TREOR90 is to give a C negative value of VOL, ex. VOL=-2000. C See comments on the top of this list. C C C C CEM =25 MAX CELL EDGE (IN ANGSTROEM) C THE COMPUTING TIME IS STRONGLY DEPENDENT ON THE C VOL AND CEM PARAMETERS. THEREFORE,IF POSSIBLE C PUT IN SMALLER VALUES (AT LEAST IN MONOCLINIC TRIALS) C C D1 =0.0002 DEFINED AS FOR PROGRAM PIRUM. C (WERNER P.E. ARKIV KEMI 31(1969)513-516) C C SSQTL =0.05 DEFINED AS FOR PROGRAM PIRUM. C C D2 =0.0004 DEFINED AS FOR PROGRAM PIRUM. C A LINE IS CONSIDERED AS INDEXED IF.. C SINE SQUARE THETA IS LESS THAN 0.05 AND C ABS(SINE SQUARE THETA OBSERVED MINUS SINE SQUARE C THETA CALCULATED) IS LESS THAN D1 OR.... C IF SINE SQUARE THETA IS GREATER THAN 0.05 AND C THE CORRESPONDING DIFFERENCE IS LESS THAN D2. C OBS. THE PARAMETERS D1,SSQTL AND D2 ARE USED IN THE C TRIAL INDEXING PART AS WELL AS THE LEAST-SQUARES C REFINEMENTS. C OBS. 'D1,SSQTL AND D2' ARE DEPENDENT ON 'WAVE' C OBS. THE PARAMETER D2 IS ALSO USED IN THE DIFFERENCE C ANALYSIS. C C CHOICE =0 INDICATOR DEFINING 'SQ' ON CARD SET TWO. C CHOICE=0 SQ=SINE SQUARE THETA C =1 SQ=1/(D*D) ('D'-SPACING IN ANGSTROEM) C =2 SQ=THETA ('THETA'=BRAGG ANGLE IN DEG.) C =3 SQ=2*THETA C =4 SQ=D C OBS. IF 'CHOICE' IS NON ZERO IT IS ALWAYS POSSIBLE TO C USE WAVE=1.54051 (THE NORMAL VALUE) C C DENS =0 DENSITY NOT USED. C IF ONLY AN INTEGRAL NUMBER OF MOLECULES IN THE UNIT C CELL IS ACCEPTED THE PARAMETERS DENS,EDENS AND MOLW C MAY BE USED. (ON YOUR OWN RESPONSIBILITY) C DENS EQ. DENSITY IN GRAM PER CM**3 C C EDENS =0 NOT USED UNLESS DENS EQ. NON ZERO. C EDENS EQ. MAX. DEVIATION IN THE PARAMETER DENS. C OBS. DENS AND EDENS ARE USED IN TRIAL CALCULATIONS C I.E. THEY ARE USED IN TESTS ON NON REFINED UNIT CELLS. C IT IS THEREFORE RECOMMENDED TO USE AN EDENS WHICH IS C THE EXPECTED MAX. DEVIATION IN DENS PLUS 5-10 PER CENT C OF DENS. OBS. THE CHOICE OF EDENS SHOULD BE DEPENDENT C ON THE QUALITY OF YOUR DIFFRACTION DATA. C C MOLW =0 NOT USED UNLESS DENS ( AND EDENS ) EQ. NON ZERO C MOL. WEIGHT IN A.U. (OBS CRYSTAL WATER INCLUDED) C C THE PARAMETERS DENS,EDENS AND MOLW (IF KNOWN) MAY BE C USED IN MONOCLINIC AND TRICLINIC TESTS IN ORDER TO C REDUCE THE COMPUTER TIME NEEDED. IT IS NOT RECOMMENDED C TO USE THESE PARAMETERS FOR ORTHORHOMBIC AND HIGHER C SYMMETRIES. C C TRIC =0 NO TRICLINIC TEST. C IF TRIC=1 ALL HIGHER SYMMETRY TESTS ARE OMITTED AND C A (TIMECONSUMING) TRICLINIC TEST IS MADE. C IT IS PRESUPPOSED THAT ALL HIGHER SYMMETRIES HAVE C BEEN TRIED IN EARLIER RUNS. ALTHOUGH IT IS IN C PRINCIPLE POSSIBLE TO INDEX ANY PATTERN AS TRICLINIC, C THE INDEXING ALGORITHM USED HERE IS MORE C EFFECTIVE FOR TRUE TRICLINIC THAN FOR PSEUDO- C TRICLINIC PATTERNS. FOR EXAMPLE A MONOCLINIC PATTERN C MAY BE CORRECTLY INDEXED BY A TRICLINIC CELL (USING C TRIC=1) BUT THIS IS NOT THE RECOMMENDED PROCEDURE. C FURTHERMORE, THE TRICLINIC TEST IS TIMECONSUMING C (TYPICAL 10-20 MINUTES CPU-TIME ON A VAX 11/750). C OBS. FOR A TRUE TRICLINIC CELL THE PARAMETER VOL C MAY BE GIVEN THE ESTIMATED VALUE (C.F. THE WARNINGS C GIVEN ABOVE -SEE S T R A T E G Y....) PLUS C 200 A**3. C C C END* THIS KEYWORD DENOTES THE END OF THE PARAMETER LIST C (I.E. END OF CARD SET THREE) C C C C POINTS TO REMEMBER : C C (1) Do not forget to rerun a problem also when a reasonable solution is C found, changing MERIT and/or NIX in steps. Note that a main C difference between TREOR90 and most of the other indexing programs, C is that TREOR may stop when a reasonable solution, not always the C best one is found. PC 486DX computers are so fast that everybody C can afford to rerun problems. C (2) The most important Key-words for general users are CHOICE, VOL, MERIT, C NIX, IDIV, D1 and D2. It may be a standard procedure to increase D1 C from 0.0002 to 0.0003, and D2 from 0.0004 to 0.0005 if no solution is C found. OBS...only if the indexing fails. C (3) The normal run should always be a TREOR90 run i.e. VOL=a negative C number. Standard: VOL=-2000. C C C C C O M M E N T S F O R T H E P R O G R A M M E R C C C THE FILES ARE OPENED IN THE MAIN PROGRAM (THE FIRST PROG). C C THE LOGICAL UNITS ARE.. C NUIT=9 THE CONDENSED OUTPUT FILE. C IIN=8 THE DATA INPUT FILE. C IOUT=7 THE OUTPUT FILE. C NDISP=6 OUTPUT (ON DISPLAY) OF TRIAL PARAMETERS IF KEYWORD LIST=1 C (SEE KEYWORDS IQ AND LIST) C LKEY=5 KEY-BOARD. C THE LOGICAL UNIT NUMBERS 5,6,7,8 AND 9 ARE GIVEN IN THE MAIN PROGRAM C AND MAY BE CHANGED FOR YOUR COMPUTER. THEY NEED NOT BE CHANGED IN C ANY OTHER PLACE OF THE PROGRAM, HOWEVER. C C IF YOU ARE USING A VECTOR PROCESSOR THE VECTORIZED VERSION C OF THE SUBROUTINES ORTAL, MAEG AND COUNT SHOULD BE USED. C A SUBROUTINE NAMED HKLP SHOULD ALSO BE INCLUDED AND CALLED C ONCE FROM SUBR. PWINL C C C THE PROGRAM IS MAINLY WRITTEN IN FORTRAN (II) AND (IV), BUT C FORTRAN 77 HAS BEEN USED TO SOME EXTENT. (SEE FOR EXAMPLE SUBROUTINE C TWODIM.)-IT IS THE INTENTION, HOWEVER, THAT IT SHOULD NOT BE C DIFFICULT TO REWRITE THE FORTRAN 77 STATEMENTS IF ONLY FORTRAN(IV) C IS AVAILABLE. C C VERSION 4 OF THE PROGRAM HAS BEEN DEVELOPED AT C STOCKHOLM UNIVERSITY USING A VAX 11/750 COMPUTER. C VERSION 5 WAS DEVELOPED FOR CONVEX 210, VAX 11/750 AND IBM PC/AT. C VERSION TREOR90 IS WRITTEN FOR CONVEX 210. A NON-VECTORIZED C VERSION IS ALSO AVAILABLE FOR VAX COMPUTERS. TRICLINIC TESTS C MAY BE VERY TIMECONSUMING ON A VAX, HOWEVER. C C CALLS FROM THE MAIN PROGRAM ARE TO... C PWINL.....THE DATA INPUT ROUTINE. C TREOB.....THE TRIAL MODULE (THE MOST TIME-CONSUMING PART). C TREOC.....PROG. FOR DIFFERENCE ANALYSIS AND ORGANISATION FOR TREOD. C TREOD.....LEAST SQUARES REFINEMENTS OF THE BEST TRIAL CELLS. C GET_CPU_TIME.....THIS SUBROUTINE MAY BE OMITTED. THEN THE CALLS C FROM THE MAIN PROGRAM MUST BE SKIPPED. THE C SUBROUTINE IS MACHINE DEPENDENT. NO OTHER C PART OF THE PROGRAM IS MACHINE DEPENDENT. C ON CONVEX THE DTIME ROUTINE IS USED. C C C C BELOW IS A LIST OF THE COMMAND FILE USED FOR C THE VAX 11/750 AVAILABLE AT THE ARRHENIUS LABORATORY, C UNIVERSITY OF STOCKHOLM, SWEDEN. C C $INQUIRE/P TREDAT "TREOR INPUT DATA FILE" $INQUIRE/P LIST "OUTPUT FILE" $INQUIRE/P COND "CONDENSED OUTPUT FILE" $INQUIRE/P TYPE "EXECUTE (E) OR BATCH (B)" $IF TYPE .EQS. "B" THEN GOTO BATCH $IF TYPE .EQS. "E" THEN GOTO START $EXIT $! $START: $ASSIGN 'LIST' LIST $ASSIGN 'TREDAT' TREDAT $ASSIGN 'COND' COND $ON CONTROL_Y THEN CONTINUE $ASSIGN/USER_MODE SYS$COMMAND: SYS$INPUT $RUN TREOR $DEASSIGN LIST $DEASSIGN TREDAT $DEASSIGN COND $EXIT $! $BATCH: $INQUIRE/P JOBNAME "JOB NAME" $OPEN/WRITE JOB TREORJOB.TMP $WRITE JOB "$SET NOVERIFY" $WRITE JOB "$SET DEFAULT ''F$DIRECTORY()'" $WRITE JOB "$ASSIGN ''LIST' LIST" $WRITE JOB "$ASSIGN ''TREDAT' TREDAT" $WRITE JOB "$ASSIGN ''COND' COND" $WRITE JOB "$RUN TREOR $WRITE JOB "$DELETE/LOG *.TMP;* $WRITE JOB "$EXIT" $CLOSE JOB $SUBMIT/NOTIFY/NAME='JOBNAME'/QUEUE=SYS$BATCH TREORJOB.TMP E N D O F P R O G R A M I N S T R U C T I O N S T E S T E X A M P L E S (USING TREOR VERSION 4.) NO CHANGES IN THE INPUT DATA ARE NEEDED FOR VERSION 5. EXAMPLE 1. INPUT DATA.. NBS 25 SEC.17 P.77 SR2CR2O7 7.91 7.238 5.601 4.739 4.423 4.070 3.538 3.474 3.443 3.315 3.040 2.950 2.931 2.836 2.796 2.751 2.673 2.636 2.609 2.596 2.503 2.420 2.413 2.357 2.305 CHOICE=4, END* END OF INPUT DATA. COMMENT. THE FIRST LINES GIVEN BY NBS ARE 7.91, 7.24, 5.601, 4.739, 4.070, 3.955, 3.619 ETC. ACCORDING TO THE RULE GIVEN IN THE TREOR COMMENT LIST (SEE. SECTION..INPUT DATA...LINE SET TWO) THE LINES 3.955 (=7.91/2) AND 3.619 (=7.238/2) ARE OMITTED IN THE TREOR RUN. THE LINE 7.24 IS ADJUSTED TO 7.238. THE FOLLOWING IS THE OUTPUT LIST FROM TREOR.... TREOR (4)- 84 10 02 NBS 25 SEC.17 P.77 SR2CR2O7 7.910000 7.238000 5.601000 4.739000 4.423000 4.070000 3.538000 3.474000 3.443000 3.315000 3.040000 2.950000 2.931000 2.836000 2.796000 2.751000 2.673000 2.636000 2.609000 2.596000 2.503000 2.420000 2.413000 2.357000 2.305000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 25.0 MAX CELL VOLUME= 2000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 CUBIC TEST SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 TETRAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 K= 19 XY= 0.00474 0.00658 CYCLE RESULTS 0.004739 0.006598 0.000000 0.000000 0.000000 0.000000 0.004739 0.006598 0.000000 0.000000 0.000000 0.000000 0.004739 0.006598 0.000000 0.000000 0.000000 0.000000 NUMBER OF SINGLE INDEXED LINES= 21 TOTAL NUMBER OF LINES= 25 NUMBER OF SINGLE INDEXED LINES = 21 TOTAL NUMBER OF LINES = 25 A = 11.189680 0.001176 A ALFA = 90.000000 0.000000 DEG B = 11.189680 0.001176 A BETA = 90.000000 0.000000 DEG C = 9.482903 0.002338 A GAMMA = 90.000000 0.000000 DEG UNIT CELL VOLUME = 1187.34 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 1 1 0 0.009488 0.009478 0.000010 11.180 11.174 7.9080 1 0 1 0.011323 0.011337 -0.000014 12.217 12.225 7.2390 2 0 0 0.018975 0.018956 0.000019 15.835 15.827 5.5920 0 0 2 0.026421 0.026393 0.000027 18.709 18.699 4.7390 2 1 1 0.030331 0.030293 0.000038 20.059 20.047 4.4230 1 1 2 0.035820 0.035871 -0.000051 21.820 21.835 4.0700 3 1 0 0.047403 0.047390 0.000013 25.150 25.147 3.5380 3 0 1 0.049165 0.049249 -0.000084 25.622 25.644 3.4740 2 1 2 0.050055 0.050088 -0.000034 25.856 25.865 3.4430 3 1 1 0.053995 0.053988 0.000007 26.873 26.871 3.3150 1 0 3 0.064205 0.064124 0.000081 29.356 29.337 3.0400 2 2 2 0.064305 29.379 3 2 1 0.068183 0.068205 -0.000022 30.273 30.278 2.9500 1 1 3 0.068863 30.427 3 0 2 0.069070 0.069044 0.000026 30.474 30.468 2.9310 3 1 2 0.073775 0.073783 -0.000009 31.521 31.523 2.8360 4 0 0 0.075900 0.075823 0.000077 31.984 31.967 2.7960 2 0 3 0.078404 0.078341 0.000063 32.521 32.508 2.7510 2 1 3 0.083046 0.083080 -0.000034 33.498 33.505 2.6730 3 3 0 0.085394 0.085301 0.000093 33.982 33.963 2.6360 4 1 1 0.087171 0.087161 0.000010 34.345 34.343 2.6090 3 2 2 0.088046 0.088000 0.000046 34.522 34.513 2.5960 4 2 0 0.094710 0.094779 -0.000069 35.847 35.861 2.5030 4 2 1 0.101318 0.101378 -0.000059 37.121 37.132 2.4200 3 0 3 0.101907 0.102036 -0.000129 37.233 37.257 2.4130 4 0 2 0.102217 37.291 3 1 3 0.106807 0.106775 0.000032 38.151 38.145 2.3570 4 1 2 0.106956 38.179 3 3 2 0.111680 0.111695 -0.000014 39.046 39.049 2.3050 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 29 M( 20)= 32 AV.EPS.= 0.0000378 F 20 = 57.(0.009765, 36) M( 25)= 29 AV.EPS.= 0.0000424 F 25 = 54.(0.010122, 46) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED CHECK IF THERE IS ANY COMMON FACTOR IN THE QUADRATIC FORMS CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF CALCULATIONS USED CPU-TIME= 3. SEC. END OF THE OUTPUT LIST. COMMENT. NOTE COMMENT F IN SECTION ..HOW TO INTERPRET THE OUTPUT.. THE ORTHORHMBIC CHECK (KS=0 AND THS=0) IS NOT INCLUDED HERE. IF YOU RUN THE ORTHORHOMBIC TEST YOU WILL SEE THAT AN IDENTICAL SOLUTION IS FOUND. (A NON REFINEABLE ORTHORHOMBIC CELL WILL AUTOMATICALLY BE CONVERTED TO THE TETRAGONAL CELL) EXAMPLE 2. INPUT DATA NBS.25 SEC.17 P.7 NH4B5O8*4H2O 6.00 5.67 5.52 4.951 4.617 4.427 3.544 3.383 3.334 3.271 3.003 2.926 2.868 2.834 2.760 2.680 2.627 2.586 2.533 2.479 2.414 2.367 2.332 2.317 2.312 CHOICE=4, END* END OF INPUT DATA. COMMENT. NOTE THAT IN ALL EXAMPLES THE 25 FIRST LINES (NOT MORE) ARE INCLUDED IN THE INPUT DATA FILE. THE FOLLOWING IS THE OUTPUT LIST FROM TREOR.. TREOR (4)- 84 10 02 NBS.25 SEC.17 P.7 NH4B5O8*4H2O 6.000000 5.670000 5.520000 4.951000 4.617000 4.427000 3.544000 3.383000 3.334000 3.271000 3.003000 2.926000 2.868000 2.834000 2.760000 2.680000 2.627000 2.586000 2.533000 2.479000 2.414000 2.367000 2.332000 2.317000 2.312000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 25.0 MAX CELL VOLUME= 2000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 CUBIC TEST SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 TETRAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 HEXAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ORTHORHOMBIC TEST SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 K= 19 XYZ= 0.00462 0.00487 0.00696 CYCLE RESULTS 0.004620 0.004876 0.006953 0.000000 0.000000 0.000000 0.004621 0.004876 0.006955 0.000000 0.000000 0.000000 0.004620 0.004876 0.006956 0.000000 0.000000 0.000000 NUMBER OF SINGLE INDEXED LINES= 21 TOTAL NUMBER OF LINES= 25 NUMBER OF SINGLE INDEXED LINES = 21 TOTAL NUMBER OF LINES = 25 A = 11.333113 0.003438 A ALFA = 90.000000 0.000000 DEG B = 11.031460 0.002297 A BETA = 90.000000 0.000000 DEG C = 9.236147 0.003381 A GAMMA = 90.000000 0.000000 DEG UNIT CELL VOLUME = 1154.71 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 1 1 1 0.016449 0.016451 -0.000002 14.738 14.738 6.0060 2 0 0 0.018470 0.018479 -0.000009 15.622 15.626 5.6680 0 2 0 0.019473 0.019504 -0.000030 16.043 16.056 5.5200 1 2 0 0.024138 0.024123 0.000015 17.876 17.870 4.9580 0 0 2 0.027751 0.027823 -0.000071 19.179 19.204 4.6240 2 1 1 0.030276 0.030311 -0.000035 20.041 20.053 4.4270 0 2 2 0.047242 0.047326 -0.000084 25.107 25.130 3.5440 1 2 2 0.051846 0.051946 -0.000100 26.323 26.349 3.3830 3 1 1 0.053381 0.053409 -0.000028 26.717 26.724 3.3340 1 3 1 0.055457 0.055458 -0.000001 27.241 27.242 3.2710 2 2 2 0.065797 0.065805 -0.000008 29.726 29.728 3.0030 2 3 1 0.069306 0.069318 -0.000012 30.527 30.530 2.9260 3 0 2 0.069400 30.549 1 1 3 0.072137 0.072096 0.000041 31.160 31.151 2.8680 4 0 0 0.073879 0.073916 -0.000038 31.544 31.552 2.8340 3 1 2 0.074276 31.631 0 4 0 0.077893 0.078014 -0.000121 32.412 32.438 2.7600 1 4 0 0.082613 0.082634 -0.000021 33.408 33.412 2.6800 4 1 1 0.085748 34.055 2 1 3 0.085980 0.085956 0.000025 34.102 34.097 2.6270 3 2 2 0.088728 0.088904 -0.000176 34.660 34.695 2.5860 3 3 1 0.092480 0.092416 0.000064 35.409 35.396 2.5330 2 4 0 0.096553 0.096493 0.000060 36.206 36.195 2.4790 4 0 2 0.101823 0.101739 0.000084 37.217 37.201 2.4140 0 4 2 0.105906 0.105837 0.000070 37.984 37.971 2.3670 3 1 3 0.109109 0.109055 0.000055 38.576 38.566 2.3320 1 4 2 0.110527 0.110456 0.000070 38.836 38.823 2.3170 1 3 3 0.111005 0.111103 -0.000098 38.923 38.941 2.3120 0 0 4 0.111290 38.975 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 29 M( 20)= 16 AV.EPS.= 0.0000469 F 20 = 27.(0.011589, 64) M( 25)= 14 AV.EPS.= 0.0000526 F 25 = 29.(0.012058, 74) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED CHECK IF THERE IS ANY COMMON FACTOR IN THE QUADRATIC FORMS CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF CALCULATIONS USED CPU-TIME= 41. SEC. END OF THE OUTPUT LIST. COMMENT. NOTE THAT THE LINES 6.00, 5.67, 4.951, AND 4.617 ARE ADJUSTED BY THE PROGRAM BECAUSE HIGHER ORDER LINES ARE AVAILABLE FOR ALL THESE LINES. IF YOU WANT TO AVOID SUCH ADJUSTMENTS..GIVE IDIV=0.. IN THE INPUT LIST. EXAMPLE 3. INPUT DATA NBS.25 SEC.17 P.9 (NH4)2NI(SO4)2*6H2O 7.19 6.24 5.98 5.388 5.248 5.090 4.397 4.316 4.243 4.166 4.147 3.952 3.757 3.586 3.466 3.410 3.376 3.119 3.037 3.027 2.943 2.913 2.903 2.892 2.853 CHOICE=4, VOL=1000, CEM=20, KS=0,THS=0,OS1=0, MONO=130, END* END OF INPUT DATA. COMMENT. IT IS PRESUPPOSED THAT THE HIGH SYMMETRY TESTS (I.E. CHOICE=4,END* ) HAVE FAILED. THEN THIS IS THE NORMAL FIRST MONOCLINIC TEST. THE FOLLOWING IS THE OUTPUT LIST FROM TREOR.. TREOR (4)- 84 10 02 NBS.25 SEC.17 P.9 (NH4)2NI(SO4)2*6H2O 7.190000 6.240000 5.980000 5.388000 5.248000 5.090000 4.397000 4.316000 4.243000 4.166000 4.147000 3.952000 3.757000 3.586000 3.466000 3.410000 3.376000 3.119000 3.037000 3.027000 2.943000 2.913000 2.903000 2.892000 2.853000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 20.0 MAX CELL VOLUME= 1000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 CUBIC TEST SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 TETRAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 HEXAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 ORTHORHOMBIC TEST SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 0 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 MONOCLINIC TEST MAX BETA ALLOWED= 130 DEG. (020)-SEARCH K= 19 XYZU= 0.007666 0.003812 0.016593 0.006526 CYCLE RESULTS 0.007675 0.003815 0.016637 0.006583 0.000000 0.000000 0.007679 0.003814 0.016640 0.006579 0.000000 0.000000 0.007679 0.003814 0.016640 0.006579 0.000000 0.000000 NUMBER OF SINGLE INDEXED LINES= 20 TOTAL NUMBER OF LINES= 25 NUMBER OF SINGLE INDEXED LINES = 20 TOTAL NUMBER OF LINES = 25 A = 9.188087 0.001842 A ALFA = 90.000000 0.000000 DEG B = 12.472351 0.004108 A BETA =106.917381 0.020982 DEG C = 6.241651 0.001464 A GAMMA = 90.000000 0.000000 DEG UNIT CELL VOLUME = 684.32 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 1 1 0 0.011478 0.011493 -0.000015 12.300 12.309 7.1900 0 2 0 0.015249 0.015257 -0.000009 14.187 14.191 6.2380 0 0 1 0.016593 0.016640 -0.000047 14.802 14.823 5.9800 0 1 1 0.020439 0.020454 -0.000015 16.439 16.445 5.3880 -1 1 1 0.021544 0.021554 -0.000010 16.881 16.885 5.2480 1 2 0 0.022903 0.022936 -0.000034 17.409 17.422 5.0900 2 0 0 0.030691 0.030715 -0.000025 20.179 20.187 4.3970 0 2 1 0.031853 0.031897 -0.000044 20.562 20.576 4.3160 -1 2 1 0.032959 0.032997 -0.000039 20.920 20.932 4.2430 -2 0 1 0.034189 0.034198 -0.000009 21.311 21.314 4.1660 0 3 0 0.034329 21.355 2 1 0 0.034503 0.034530 -0.000027 21.410 21.418 4.1470 -2 1 1 0.037991 0.038012 -0.000021 22.479 22.486 3.9520 1 3 0 0.042037 0.042008 0.000029 23.663 23.654 3.7570 2 2 0 0.045973 24.762 1 2 1 0.046142 0.046154 -0.000012 24.808 24.812 3.5860 -2 2 1 0.049393 0.049455 -0.000063 25.682 25.698 3.4660 0 3 1 0.051028 0.050969 0.000059 26.111 26.096 3.4100 -1 3 1 0.052061 0.052069 -0.000008 26.379 26.381 3.3760 0 4 0 0.060994 0.061030 -0.000036 28.597 28.605 3.1190 -1 0 2 0.061080 28.617 2 1 1 0.064332 0.064326 0.000006 29.386 29.384 3.0370 -1 1 2 0.064758 0.064895 -0.000137 29.485 29.517 3.0270 2 3 0 0.065044 29.552 -2 3 1 0.068508 0.068527 -0.000020 30.347 30.351 2.9430 1 4 0 0.068709 30.392 -3 1 1 0.069926 0.069828 0.000098 30.667 30.645 2.9130 0 1 2 0.070408 0.070373 0.000035 30.775 30.767 2.9030 -2 0 2 0.070945 0.070960 -0.000015 30.895 30.898 2.8920 3 1 0 0.072898 0.072924 -0.000026 31.328 31.334 2.8530 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 30 M( 20)= 36 AV.EPS.= 0.0000322 F 20 = 73.(0.009822, 28) M( 25)= 28 AV.EPS.= 0.0000335 F 25 = 67.(0.009592, 39) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED CHECK IF THERE IS ANY COMMON FACTOR IN THE QUADRATIC FORMS CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF CALCULATIONS NUMBER OF CELLS WITH 16 OR MORE INDEXABLE LINES IN MONOCLINIC (020)-TESTS 13 SOLUTIONS IN MONOCLINIC DOMINANT ZONE TESTS 0 SOLUTIONS IN MONOCLINIC GENERAL TESTS 0 SOLUTIONS IN TRICLINIC TESTS 0 SOLUTIONS USED CPU-TIME= 21. SEC. END OF THE OUTPUT LIST. COMMENT. NO GENERAL MONOCLINIC TESTS (OR SHORT AXIS TESTS) HAVE BEEN MADE AS THE SOLUTION WAS FOUND BY THE DEDUCTIVE (020)-FINDING ALGORITHM. EXAMPLE 4. INPUT DATA.. NBS.25 SEC.17 P.11 (NH4)2S2O3 5.480 5.093 4.741 4.553 4.386 4.257 3.501 3.469 3.353 3.248 3.199 3.046 3.010 2.925 2.915 2.785 2.739 2.629 2.612 2.582 2.569 2.547 2.536 2.500 2.453 CHOICE=4, VOL=1000, CEM=20, MONO=130, KS=0,THS=0,OS1=0, END* END OF INPUT DATA. COMMENT. CONDITIONS AS IN EXAMPLE 3 ABOVE. THE FOLLOWING IS THE OUTPUT LIST FROM TREOR.. TREOR (4)- 84 10 02 NBS.25 SEC.17 P.11 (NH4)2S2O3 5.480000 5.093000 4.741000 4.553000 4.386000 4.257000 3.501000 3.469000 3.353000 3.248000 3.199000 3.046000 3.010000 2.925000 2.915000 2.785000 2.739000 2.629000 2.612000 2.582000 2.569000 2.547000 2.536000 2.500000 2.453000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 20.0 MAX CELL VOLUME= 1000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 CUBIC TEST SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 TETRAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 HEXAGONAL TEST SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 0 ORTHORHOMBIC TEST SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 0 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 MONOCLINIC TEST MAX BETA ALLOWED= 130 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 K= 19 XYZU= 0.005717 0.014056 0.007738 0.001113 CYCLE RESULTS 0.005716 0.014053 0.007705 0.001085 0.000000 0.000000 0.005716 0.014056 0.007700 0.001080 0.000000 0.000000 0.005716 0.014056 0.007700 0.001080 0.000000 0.000000 NUMBER OF SINGLE INDEXED LINES= 21 TOTAL NUMBER OF LINES= 25 NUMBER OF SINGLE INDEXED LINES = 21 TOTAL NUMBER OF LINES = 25 A = 10.222344 0.001990 A ALFA = 90.000000 0.000000 DEG B = 6.497315 0.001773 A BETA = 94.669502 0.020604 DEG C = 8.807463 0.001939 A GAMMA = 90.000000 0.000000 DEG UNIT CELL VOLUME = 583.03 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 1 1 0 0.019773 0.019772 0.000001 16.167 16.167 5.4780 2 0 0 0.022867 0.022865 0.000002 17.395 17.394 5.0940 -1 1 1 0.026398 0.026392 0.000007 18.701 18.699 4.7410 1 1 1 0.028624 0.028552 0.000071 19.481 19.456 4.5530 0 0 2 0.030845 0.030801 0.000044 20.230 20.216 4.3860 2 0 1 0.032742 0.032725 0.000017 20.850 20.845 4.2570 -1 1 2 0.048410 0.048412 -0.000003 25.421 25.421 3.5010 -2 0 2 0.049307 0.049345 -0.000038 25.659 25.669 3.4690 1 1 2 0.052778 0.052733 0.000045 26.563 26.551 3.3530 -3 0 1 0.055905 27.353 0 2 0 0.056245 0.056223 0.000023 27.438 27.432 3.2480 2 0 2 0.057982 0.057986 -0.000005 27.867 27.868 3.1990 0 2 1 0.063953 0.063923 0.000030 29.297 29.290 3.0460 3 1 0 0.065492 0.065501 -0.000010 29.655 29.658 3.0100 0 0 3 0.069353 0.069302 0.000051 30.538 30.526 2.9250 -3 1 1 0.069830 0.069961 -0.000131 30.645 30.675 2.9150 3 1 1 0.076501 0.076442 0.000059 32.113 32.101 2.7850 2 2 0 0.079092 0.079087 0.000005 32.668 32.667 2.7390 -2 0 3 0.085686 34.042 -1 1 3 0.085849 0.085834 0.000016 34.075 34.072 2.6290 0 2 2 0.086971 0.087024 -0.000053 34.304 34.315 2.6120 3 0 2 0.088728 34.660 2 2 1 0.089003 0.088948 0.000055 34.715 34.704 2.5820 -3 1 2 0.089906 0.089821 0.000085 34.896 34.879 2.5690 4 0 0 0.091466 0.091459 0.000007 35.208 35.206 2.5470 1 1 3 0.092261 0.092315 -0.000053 35.365 35.376 2.5360 -4 0 1 0.094838 35.872 1 2 2 0.094938 0.094900 0.000038 35.892 35.885 2.5000 2 0 3 0.098611 0.098648 -0.000037 36.604 36.611 2.4530 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 29 M( 20)= 28 AV.EPS.= 0.0000332 F 20 = 51.(0.008314, 48) M( 25)= 26 AV.EPS.= 0.0000354 F 25 = 56.(0.008396, 54) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED CHECK IF THERE IS ANY COMMON FACTOR IN THE QUADRATIC FORMS CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF CALCULATIONS NUMBER OF CELLS WITH 16 OR MORE INDEXABLE LINES IN MONOCLINIC (020)-TESTS 0 SOLUTIONS IN MONOCLINIC SHORT AXIS TESTS 0 SOLUTIONS IN MONOCLINIC GENERAL TESTS 13 SOLUTIONS IN TRICLINIC TESTS 0 SOLUTIONS USED CPU-TIME= 120. SEC. END OF OUTPUT LIST. COMMENT. NO SOLUTION WAS FOUND IN THE (020)- AND SHORT AXIS TESTS. THE SOLUTION WAS FOUND BY THE GENERAL MONOCLINIC TESTS. EXAMPLE 5. INPUT DATA. NBS.25 SEC.17 P.64 K2S2O8 5.27 4.892 4.847 4.602 3.750 3.699 3.603 3.443 3.268 3.232 3.153 3.025 2.736 2.634 2.548 2.466 2.419 2.397 2.358 2.315 2.297 2.273 2.239 2.154 2.098 CHOICE=4, CEM=20, VOL=500, TRIC=1, END* END OF INPUT DATA. COMMENT. IT IS PRESUPPOSED THAT HIGH SYMMETRY TESTS (CUBIC, TETRAGONAL, HEXAGONAL AND ORTHORHOMBIC) AS WELL AS MONOCLINIC TESTS HAVE FAILED. BY USING THE PARAMETER...TRIC=1...THE PROGRAM WILL GO DIRECTLY TO THE TRICLINIC TESTS. D20=2.315 AND 13.39*(2.135**3)=130 IS THE ESTIMATED CELL VOLUME. (FOUND VOLUME=182 SEE. BELOW). IT IS REASONABLE TO ADD A FEW HUNDRED CUBIC ANGSTROEM FOR THE VOL PARAMETER. THE FOLLOWING IS THE OUTPUT LIST FROM TREOR.. TREOR (4)- 84 10 02 NBS.25 SEC.17 P.64 K2S2O8 5.270000 4.892000 4.847000 4.602000 3.750000 3.699000 3.603000 3.443000 3.268000 3.232000 3.153000 3.025000 2.736000 2.634000 2.548000 2.466000 2.419000 2.397000 2.358000 2.315000 2.297000 2.273000 2.239000 2.154000 2.098000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 20.0 MAX CELL VOLUME= 500.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 TRICLINIC TEST K= 19 A11-33= 0.024794 0.021381 0.014148 A12-23= 0.003980-0.010827-0.010179 CYCLE RESULTS 0.024733 0.021358 0.014199 -0.010851 0.004041 -0.010185 0.024732 0.021360 0.014204 -0.010857 0.004044 -0.010192 0.024732 0.021360 0.014204 -0.010857 0.004044 -0.010192 NUMBER OF SINGLE INDEXED LINES= 19 TOTAL NUMBER OF LINES= 25 NUMBER OF SINGLE INDEXED LINES = 19 TOTAL NUMBER OF LINES = 25 A = 5.117541 0.001495 A ALFA = 73.732178 0.028467 DEG B = 5.511826 0.002494 A BETA = 73.916046 0.040242 DEG C = 7.034377 0.002352 A GAMMA = 90.202797 0.030145 DEG UNIT CELL VOLUME = 182.31 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 0 1 0 0.021381 0.021360 0.000021 16.816 16.808 5.2680 1 0 0 0.024794 0.024732 0.000062 18.119 18.096 4.8920 0 1 1 0.025351 0.025372 -0.000021 18.323 18.331 4.8380 1 0 1 0.028115 0.028079 0.000036 19.305 19.293 4.5940 -1 1 0 0.042195 0.042047 0.000147 23.707 23.665 3.7500 1 1 1 0.043366 0.043290 0.000076 24.039 24.018 3.6990 0 -1 1 0.045708 0.045755 -0.000048 24.690 24.703 3.6030 1 1 0 0.050055 0.050135 -0.000081 25.856 25.878 3.4430 1 -1 1 0.055559 0.055586 -0.000027 27.267 27.274 3.2680 0 0 2 0.056804 0.056816 -0.000012 27.577 27.580 3.2320 -1 1 1 0.056917 27.605 1 0 2 0.059686 0.059833 -0.000148 28.282 28.317 3.1530 1 1 2 0.064844 0.064854 -0.000010 29.505 29.507 3.0250 0 2 1 0.079266 0.079259 0.000007 32.705 32.703 2.7360 -1 -1 1 0.085388 33.981 0 2 0 0.085524 0.085438 0.000085 34.009 33.991 2.6340 2 0 1 0.091394 0.091416 -0.000022 35.193 35.198 2.5480 1 -1 2 0.097574 0.097533 0.000041 36.404 36.396 2.4660 1 2 1 0.101222 37.103 0 2 2 0.101402 0.101487 -0.000085 37.137 37.153 2.4190 -1 0 2 0.103272 0.103262 0.000010 37.490 37.488 2.3970 -1 2 1 0.106716 0.106760 -0.000043 38.134 38.142 2.3580 2 1 1 0.110718 0.110672 0.000045 38.871 38.862 2.3150 -2 1 0 0.112198 39.140 2 0 2 0.112314 39.161 1 2 2 0.112460 0.112593 -0.000133 39.188 39.212 2.2970 1 1 3 0.114847 0.114825 0.000022 39.619 39.615 2.2730 2 -1 1 0.114880 39.625 1 2 0 0.118362 0.118258 0.000103 40.246 40.228 2.2390 0 1 3 0.118620 40.292 0 0 3 0.127887 0.127836 0.000051 41.907 41.899 2.1540 -2 0 1 0.134806 0.134845 -0.000039 43.081 43.088 2.0980 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 32 M( 20)= 36 AV.EPS.= 0.0000514 F 20 = 51.(0.013136, 30) M( 25)= 28 AV.EPS.= 0.0000551 F 25 = 45.(0.012985, 43) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED CHECK IF THERE IS ANY COMMON FACTOR IN THE QUADRATIC FORMS CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF CALCULATIONS NUMBER OF CELLS WITH 16 OR MORE INDEXABLE LINES IN MONOCLINIC (020)-TESTS 0 SOLUTIONS IN MONOCLINIC SHORT AXIS TESTS 0 SOLUTIONS IN MONOCLINIC GENERAL TESTS 0 SOLUTIONS IN TRICLINIC TESTS 25 SOLUTIONS USED CPU-TIME= 547. SEC. END OF THE OUTPUT LIST. COMMENT. THIS EXAMPLE IS ALSO SHOWN IN THE TREOR90 TEST EXAMPLES BELOW. THE REDUCED CELL IS OBTAINED BY THE REDUCTION PROGRAM ...REDUCT.. ( LOCAL PROGRAM AT UNIV. OF STOCKHOLM. A SIMILAR PROGRAM IS ALSO ANNOUNCED FROM NBS ) THE OUTPUT LIST FROM REDUCT IS GIVEN BELOW... *** INPUT CELL *** A= 5.11754 B= 5.51183 C= 7.03438 ALFA= 73.732 BETA= 73.916 GAMMA= 90.203 TOLERANCE=0.0500 VOLUME OF INPUT CELL= 182.3091 A3 *** REDUCED-CELL *** A= 5.11754 B= 5.51183 C= 7.03438 ALFA=106.2678 BETA=106.0840 GAMMA= 90.2029 VOLUME OF THE REDUCED CELL= 182.3091 A3 REDUCED FORM NUMBER = 44 INT.TAB.1,SECT. 5.1 *** CONVENTIONAL CELL (METRIC SYMMETRY) *** TRICLINIC P A= 5.51183 B= 7.03438 C= 5.11754 ALFA=106.0840 BETA= 90.2029 GAMMA=106.2678 VOLUME OF THE CONVENTIONAL CELL= 182.3091 A3 GENERAL COMMENTS ABOUT THE EXAMPLES GIVEN ABOVE. 1.DATA FOR ALL EXAMPLES SHOWN ABOVE ARE TAKEN FROM NATIONAL BUREAU OF STANDARDS (1980). MONOGRAPH 25 SECTION 17. M.C.MORRIS, H.F.MCMURDIE, E.H.EVANS, AND B.PARETZKIN STANDARD X-RAY DIFFRACTION POWDER PATTERNS SECTION 17 - DATA FOR 54 SUBSTANCES. 2.IN ORDER TO REDUCE THE LENGTH OF THE LISTS ABOVE, ONLY EXAMPLES GIVING SHORT OUTPUT LISTS ARE CHOSEN. USUALLY A FEW MORE TRIAL CELLS ( WITH TOO SMALL DE WOLFF FIGURE OF MERIT OR MORE THAN ONE UNINDEXED LINE WITHIN THE FIRST 20 LINES ) ARE LISTED BEFORE AN ACCEPTABLE SOLUTION IS FOUND AND THE PROGRAM THEREFOR WILL STOP. 3.THE MONOGRAPH 25 SECTION 17 CONTAINS 2 CUBIC PATTERNS 5 TETRAGONAL PATTERNS 4 HEXAGONAL PATTERNS 19 ORTHORHOMBIC PATTERNS 18 MONOCLINIC PATTERNS AND 6 TRICLINIC PATTERNS THE FOLLOWING PATTERNS SHOULD NOT BE USED FOR TREOR TESTS.. A. THE MONOCLINIC C6H8N2*HCL (P.56) BECAUSE THE B-AXIS IS MORE THAN 30 A. AS A RULE YOU SHOULD BE CAREFUL IF CELL EDGES ARE MORE THAN 20 A. IF A CELL AXIS IS MORE THAN 25 A IT IS USUALLY NECCESSARY TO HAVE SINGLE CRYSTAL DATA. FOR TRICLINIC CELLS THE LIMIT SHOULD BE ABOUT 20 A. B. THE MONOCLINIC NACLO4*H2O (P.68) BECAUSE THE SUBSTANCE IS VERY UNSTABLE (COMMENTED IN THE NBS-REPORT) AND THE DATA QUALITY IS THEREFOR LOW. IT CAN ONLY BE INDEXED BY TREOR IF SOME SPECIAL 'TRICKS' ARE USED (A LOW DE WOLFF FIGURE OF MERIT) C. THE TRICLINIC C22H25CLN2OS*2H2O (P.28) BECAUSE THE B-AXIS IS MORE THAN 20 A (SEE. COMMENT A. ABOVE). D. THE MONOCLINIC CRCL3 (P.23) BECAUSE IT OFFERS SOME CRYSTALLOGRAPHIC NON TRIVIAL PROBLEMS. THE CORRECT CELL (CONFIRMED BY SINGLE CRYSTAL DATA) IS.. A=6.123(2) A, B=10.311(3) A, C=5.956(5) A, BETA=108.64(5) DEG. V=356.3 A**3 (FIGURES FROM THE NBS MONOGRAPH) THE M19 REPORTED IS 16.0. A RECALCULATION OF THE DE WOLFF FIGURE OF MERIT TAKING INTO ACCOUNT THAT THE UNIT CELL IS CENTERED GIVES M19=45 (WHICH IS MORE CONVINCING). SOME OTHER CELLS, HOWEVER, WILL ALSO GIVE ACCEPTABLE DE WOLFF FIGURE OF MERITS (--UNLESS DENSITY AND FORMULA WEIGTH IS USED TO EXCLUDE THE SOLUTIONS). FOLLOWING EXAMPLES MAY BE MENTIONED.. 1. THE MONOCLINIC CELL A=11.852(2) A, B=4.664(7) A, C=7.751(3) A, BETA=102.27(2) DEG. V=418.6 A**3 AND M19=13 (ALL LINES INDEXED) 2. THE TRICLINIC CELL.. (THE FOUND CELL WAS REDUCED BY REDUCT) A=6.149(2) A, B=7.583(4) A, C=4.871(6) A, ALPHA=90.5(2) DEG, BETA=104.72(3) DEG, GAMMA=102.3(2) DEG. V=214.2 A**3 AND M19=17 (ALL LINES INDEXED) ALL THE REMAINING 50 PATTERNS MAY BE USED TO TEST THE PROGRAM.. WITHOUT USING DENSITY AND FORMULA WEIGHTS ( IT IS TRUE THAT INPUT OF FORMULA WEIGHT AND DENSITY WILL USUALLY CONSIDERABLY REDUCE THE COMPUTING TIMES AND MAKE THE PROGRAM MORE POWERFUL, BUT IT IS MY EXPERIENCE THAT INDEXING PROBLEMS USUALLY HAVE TO BE SOLVED BEFORE ANY ACCURATE KNOWLEDGE ABOUT COMPOSITION AND DENSITY ARE KNOWN). THE MONOCLINIC PATTERN C4H6HG2O4 (P.51) IS AN EXAMPLE WHERE THE MONOCLINIC TEST FAILS BUT A CORRECT PRIMITIVE CELL CAN BE FOUND BY THE TRICLINIC TEST. THE TRICLINIC CELL IS EASILY REDUCED TO THE CORRECT MONOCLINIC ONE BY THE REDUCTION PROGRAM. THE CPU TIMES REPORTED ABOVE REFER TO A VAX 11/750. ON CONVEX 210 THE CPU TIMES ARE ABOUT 20-50 TIMES LESS. ON IBM PC/AT THE CPU TIMES ARE ABOUT 10-20 TIMES MORE. E N D O F TREOR(4)-TEST EXAMPLES ************** ************** ************** T E S T E X A M P L E S U S I N G T R E O R 9 0 O N C O N V E X 2 1 0 ************** ************* EXAMPLE 6. INPUT DATA 36-431 CU11O2(VO4)6 900119 7.77 7.633 7.528 6.474 5.796 5.423 4.735 4.566 3.941 3.885 3.817 3.639 3.597 3.462 3.309 3.277 3.239 3.187 3.139 3.116 3.091 3.040 3.020 2.898 2.820 CHOICE=4, VOL=-2000, END* COMMENT. By using the negative VOL option, all symmetries will be tested. ...... FROM TREOR90 ON THE CONDENSED OUTPUT FILE... VERSION JANUARY 1990 36-431 CU11O2(VO4)6 900119 7.770000 7.633000 7.528000 6.474000 5.796000 5.423000 4.735000 4.566000 3.941000 3.885000 3.817000 3.639000 3.597000 3.462000 3.309000 3.277000 3.239000 3.187000 3.139000 3.116000 3.091000 3.040000 3.020000 2.898000 2.820000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES IN FIGURE OF MERIT TEST= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 25.0 MAX CELL VOLUME= 2000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 ** CUBIC TEST ********************* MAX. VOLUME= 1000. SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 ** CUBIC TEST ********************* MAX. VOLUME= 2000. SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 ** TETRAGONAL TEST **************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** TETRAGONAL TEST **************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** HEXAGONAL TEST ***************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** HEXAGONAL TEST ***************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** ORTHORHOMBIC TEST ************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 ** ORTHORHOMBIC TEST ************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 ** MONOCLINIC TEST **************** MAX. VOLUME= 1000. MAX BETA ALLOWED= 135 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 SELECTED BASE LINES= 1 3 4 5 SELECTED BASE LINES= 1 2 3 6 SELECTED BASE LINES= 2 3 4 5 SELECTED BASE LINES= 1 2 3 7 ** MONOCLINIC TEST **************** MAX. VOLUME= 2000. MAX BETA ALLOWED= 135 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 SELECTED BASE LINES= 1 3 4 5 SELECTED BASE LINES= 1 2 3 6 SELECTED BASE LINES= 2 3 4 5 SELECTED BASE LINES= 1 2 3 7 ** TRICLINIC TEST ***************** MAX. VOLUME= 2000. TRICLINIC DOMINANT ZONE TEST END OF TRICLINIC DOMINANT ZONE TEST THIS MAY BE THE SOLUTION !!! THE REFINEMENT OF THE CELL WILL NOW BE REPEATED THREE CYCLES MORE. --- GOOD LUCK ! CYCLE RESULTS 0.010470 0.010183 0.009829 0.006163 -0.006497 -0.002349 0.010470 0.010183 0.009829 0.006163 -0.006497 -0.002349 0.010470 0.010183 0.009829 0.006163 -0.006497 -0.002349 NUMBER OF SINGLE INDEXED LINES = 19 TOTAL NUMBER OF LINES = 25 A = 8.268939 0.001039 A ALFA = 88.616623 0.007595 DEG B = 8.044106 0.000533 A BETA =106.443611 0.008589 DEG C = 8.157301 0.000479 A GAMMA = 72.854095 0.005014 DEG UNIT CELL VOLUME = 493.83 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 0 0 1 0.009828 0.009829 -0.000001 11.379 11.380 7.7700 0 1 0 0.010182 0.010183 -0.000001 11.582 11.583 7.6340 1 0 0 0.010470 0.010470 0.000000 11.746 11.746 7.5280 -1 0 1 0.014140 0.014136 0.000003 13.658 13.657 6.4780 1 1 0 0.014156 13.667 0 1 1 0.017663 0.017663 0.000000 15.275 15.275 5.7960 -1 -1 1 0.020176 0.020171 0.000005 16.332 16.330 5.4230 1 0 1 0.026465 0.026463 0.000002 18.725 18.724 4.7350 -1 1 1 0.028461 0.028467 -0.000006 19.425 19.427 4.5660 1 2 0 0.038204 0.038209 -0.000005 22.543 22.544 3.9410 0 0 2 0.039313 0.039318 -0.000005 22.872 22.874 3.8850 -2 0 1 0.039383 22.893 0 2 0 0.040726 0.040732 -0.000006 23.285 23.287 3.8170 0 1 2 0.044808 0.044802 0.000005 24.442 24.440 3.6390 -1 -1 2 0.045845 24.727 0 2 1 0.045860 0.045863 -0.000003 24.731 24.732 3.5970 -1 1 2 0.049443 25.695 1 2 1 0.049507 0.049503 0.000003 25.712 25.711 3.4620 0 -1 2 0.054191 0.054199 -0.000008 26.923 26.925 3.3090 0 -2 1 0.055254 0.055260 -0.000005 27.191 27.192 3.2770 -2 0 2 0.056558 0.056545 0.000014 27.516 27.512 3.2390 2 2 0 0.056626 27.533 -2 -1 2 0.058419 0.058432 -0.000013 27.974 27.977 3.1870 -2 1 1 0.060219 0.060211 0.000009 28.411 28.408 3.1390 1 1 2 0.061112 0.061103 0.000009 28.625 28.623 3.1160 1 0 2 0.062104 0.062115 -0.000010 28.861 28.864 3.0910 2 0 1 0.064037 29.317 -1 2 0 0.064205 0.064196 0.000009 29.356 29.354 3.0400 -2 1 0 0.065059 0.065057 0.000001 29.555 29.555 3.0200 0 2 2 0.070652 0.070653 -0.000002 30.829 30.830 2.8980 -1 -2 2 0.074614 0.074596 0.000018 31.704 31.700 2.8200 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 31 M( 20)= 161 AV.EPS.= 0.0000053 F 20 = 366.(0.001519, 36) M( 25)= 145 AV.EPS.= 0.0000059 F 25 = 358.(0.001589, 44) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED M-TEST= 161 UNINDEXED IN THE TEST= 0 ANY COMMON FACTOR IN THE QUADRATIC FORMS ? ? CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF INDEXING CALCULATIONS The following unit cell reduction is ONLY valid if, and ONLY IF the unit cell found is PRIMITIVE. If the unit cell found is not primitive, you have to convert the cell to a primitive one and run a cell reduction program separately. *** INPUT CELL *** A= 8.26894 B= 8.04411 C= 8.15730 ALFA= 88.617 BETA=106.444 GAMMA= 72.854 TOLERANCE=0.0500 VOLUME OF INPUT CELL= 493.83 A3 *** REDUCED-CELL *** A= 8.04411 B= 8.15730 C= 8.26894 ALFA=106.4437 BETA=107.1459 GAMMA= 91.3834 VOLUME OF THE REDUCED CELL= 493.83 A3 REDUCED FORM NUMBER = 44 INT.TAB.1,SECT. 5.1 *** CONVENTIONAL CELL (METRIC SYMMETRY) *** TRICLINIC P A= 8.15730 B= 8.26894 C= 8.04411 ALFA=107.1459 BETA= 91.3834 GAMMA=106.4437 VOLUME OF THE CONVENTIONAL CELL= 493.83 A3 IF YOU WANT TO LOOK FOR A BETTER SOLUTION YOU MAY TRY TO INCREASE THE PARAMETER MERIT ABOVE 161 ....OR PERHAPS THIS WAS THE BEST SOLUTION... USED CPU-TIME= 50.00 SEC. END OF THE CONDENSED OUTPUT LIST. COMMENT. As seen above the program ends with a cell reduction routine. Note that volume limits are changed by statistical methods during the treor run. Therefore, the user does not need to worry much about possible unit cell volumes. EXAMPLE 7. INPUT DATA NBS.25 SEC.17 P.64 K2S2O8 5.27 4.892 4.847 4.602 3.750 3.699 3.603 3.443 3.268 3.232 3.153 3.025 2.736 2.634 2.548 2.466 2.419 2.397 2.358 2.315 2.297 2.273 2.239 2.154 2.098 CHOICE=4, VOL=-2000, END* COMMENT. Compare this example with no.5 above. It is the same pattern runned with TREOR90. It is a normal run, wich means that it starts with cubic symmmetry etc. .......FROM TREOR90 ON THE CONDENSED OUTPUT FILE... VERSION JANUARY 1990 NBS.25 SEC.17 P.64 K2S2O8 5.270000 4.892000 4.847000 4.602000 3.750000 3.699000 3.603000 3.443000 3.268000 3.232000 3.153000 3.025000 2.736000 2.634000 2.548000 2.466000 2.419000 2.397000 2.358000 2.315000 2.297000 2.273000 2.239000 2.154000 2.098000 STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES IN FIGURE OF MERIT TEST= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 25.0 MAX CELL VOLUME= 2000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 ** CUBIC TEST ********************* MAX. VOLUME= 1000. SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 ** CUBIC TEST ********************* MAX. VOLUME= 2000. SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 ** TETRAGONAL TEST **************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** TETRAGONAL TEST **************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** HEXAGONAL TEST ***************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** HEXAGONAL TEST ***************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** ORTHORHOMBIC TEST ************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 ** ORTHORHOMBIC TEST ************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 ** MONOCLINIC TEST **************** MAX. VOLUME= 1000. MAX BETA ALLOWED= 135 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 SELECTED BASE LINES= 1 3 4 5 SELECTED BASE LINES= 1 2 3 6 SELECTED BASE LINES= 2 3 4 5 SELECTED BASE LINES= 1 2 3 7 ** MONOCLINIC TEST **************** MAX. VOLUME= 2000. MAX BETA ALLOWED= 135 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 SELECTED BASE LINES= 1 3 4 5 SELECTED BASE LINES= 1 2 3 6 SELECTED BASE LINES= 2 3 4 5 SELECTED BASE LINES= 1 2 3 7 ** TRICLINIC TEST ***************** MAX. VOLUME= 2000. TRICLINIC DOMINANT ZONE TEST END OF TRICLINIC DOMINANT ZONE TEST THIS MAY BE THE SOLUTION !!! THE REFINEMENT OF THE CELL WILL NOW BE REPEATED THREE CYCLES MORE. --- GOOD LUCK ! CYCLE RESULTS 0.024732 0.021360 0.014204 -0.010857 0.004044 -0.010192 0.024732 0.021360 0.014204 -0.010857 0.004044 -0.010192 0.024732 0.021360 0.014204 -0.010857 0.004044 -0.010192 NUMBER OF SINGLE INDEXED LINES = 19 TOTAL NUMBER OF LINES = 25 A = 5.117540 0.001495 A ALFA = 73.732155 0.028466 DEG B = 5.511827 0.002494 A BETA = 73.916039 0.040241 DEG C = 7.034379 0.002352 A GAMMA = 90.202797 0.030144 DEG UNIT CELL VOLUME = 182.31 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 0 1 0 0.021381 0.021360 0.000021 16.816 16.808 5.2680 1 0 0 0.024794 0.024732 0.000062 18.119 18.096 4.8920 0 1 1 0.025351 0.025372 -0.000021 18.323 18.331 4.8380 1 0 1 0.028115 0.028079 0.000036 19.305 19.293 4.5940 -1 1 0 0.042195 0.042047 0.000147 23.707 23.665 3.7500 1 1 1 0.043366 0.043290 0.000076 24.039 24.018 3.6990 0 -1 1 0.045708 0.045755 -0.000048 24.690 24.703 3.6030 1 1 0 0.050055 0.050135 -0.000081 25.856 25.878 3.4430 1 -1 1 0.055559 0.055586 -0.000027 27.267 27.274 3.2680 0 0 2 0.056804 0.056816 -0.000012 27.577 27.580 3.2320 -1 1 1 0.056917 27.605 1 0 2 0.059686 0.059833 -0.000148 28.282 28.317 3.1530 1 1 2 0.064844 0.064854 -0.000010 29.505 29.507 3.0250 0 2 1 0.079266 0.079259 0.000007 32.705 32.703 2.7360 -1 -1 1 0.085388 33.981 0 2 0 0.085524 0.085438 0.000085 34.009 33.991 2.6340 2 0 1 0.091394 0.091416 -0.000022 35.193 35.198 2.5480 1 -1 2 0.097574 0.097533 0.000041 36.404 36.396 2.4660 1 2 1 0.101222 37.103 0 2 2 0.101402 0.101487 -0.000085 37.137 37.153 2.4190 -1 0 2 0.103272 0.103262 0.000010 37.490 37.488 2.3970 -1 2 1 0.106716 0.106759 -0.000043 38.134 38.142 2.3580 2 1 1 0.110718 0.110672 0.000045 38.871 38.862 2.3150 -2 1 0 0.112198 39.140 2 0 2 0.112314 39.161 1 2 2 0.112460 0.112593 -0.000133 39.188 39.212 2.2970 1 1 3 0.114847 0.114825 0.000022 39.619 39.615 2.2730 2 -1 1 0.114880 39.625 1 2 0 0.118362 0.118258 0.000103 40.246 40.228 2.2390 0 1 3 0.118620 40.292 0 0 3 0.127887 0.127836 0.000051 41.907 41.899 2.1540 -2 0 1 0.134806 0.134845 -0.000039 43.081 43.088 2.0980 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 32 M( 20)= 36 AV.EPS.= 0.0000514 F 20 = 51.(0.013134, 30) M( 25)= 28 AV.EPS.= 0.0000551 F 25 = 45.(0.012984, 43) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED M-TEST= 36 UNINDEXED IN THE TEST= 0 ANY COMMON FACTOR IN THE QUADRATIC FORMS ? ? CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF INDEXING CALCULATIONS The following unit cell reduction is ONLY valid if, and ONLY IF the unit cell found is PRIMITIVE. If the unit cell found is not primitive, you have to convert the cell to a primitive one and run a cell reduction program separately. *** INPUT CELL *** A= 5.11754 B= 5.51183 C= 7.03438 ALFA= 73.732 BETA= 73.916 GAMMA= 90.203 TOLERANCE=0.0500 VOLUME OF INPUT CELL= 182.31 A3 *** REDUCED-CELL *** A= 5.11754 B= 5.51183 C= 7.03438 ALFA=106.2678 BETA=106.0840 GAMMA= 90.2029 VOLUME OF THE REDUCED CELL= 182.31 A3 REDUCED FORM NUMBER = 44 INT.TAB.1,SECT. 5.1 *** CONVENTIONAL CELL (METRIC SYMMETRY) *** TRICLINIC P A= 5.51183 B= 7.03438 C= 5.11754 ALFA=106.0840 BETA= 90.2029 GAMMA=106.2678 VOLUME OF THE CONVENTIONAL CELL= 182.31 A3 IF YOU WANT TO LOOK FOR A BETTER SOLUTION YOU MAY TRY TO INCREASE THE PARAMETER MERIT ABOVE 36 ....OR PERHAPS THIS WAS THE BEST SOLUTION... USED CPU-TIME= 131.00 SEC. COMMENT. For the triclinic part of this run the used CPU-time 46 sec. The time is rather long because the normal max. volume input was used. (VOL=-2000) The user did not need to estimate a reasonable volume. Note also that the general output lists have not been printed here. The user will be informed (on the display) if an interesting result has been obtained and will be asked to not print the sometimes very long general output lists. EXAMPLE 8. INPUT DATA TRICLINIC TEST 25.16 P.92 280889 15.83 40 8.75 60 7.91 4 7.78 13 7.56 14 7.03 8 6.67 39 6.21 3 5.77 48 5.53 100 5.29 14 5.02 2 4.96 1 4.85 4 4.52 2 4.454 7 4.410 7 4.312 24 4.263 10 4.184 2 4.081 4 4.044 1 3.962 3 3.890 3 3.844 8 CHOICE=4, VOL=-2000, END* COMMENT. In this example also the intensities are given. They are never used in the calculations, but are printed on the output lists. .......FROM TREOR90 ON THE CONDENSED OUTPUT FILE........ VERSION JANUARY 1990 TRICLINIC TEST 25.16 P.92 280889 15.830000 40 8.750000 60 7.910000 4 7.780000 13 7.560000 14 7.030000 8 6.670000 39 6.210000 3 5.770000 48 5.530000 100 5.290000 14 5.020000 2 4.960000 1 4.850000 4 4.520000 2 4.454000 7 4.410000 7 4.312000 24 4.263000 10 4.184000 2 4.081000 4 4.044000 1 3.962000 3 3.890000 3 3.844000 8 LINE NUMBER= 3 SHOULD NOT BE INCLUDED IN THE TREOR BASE LINE SETS. SINE SQUARE THETA FOR THIS LINE = 4 TIMES SINE SQUARE THETA FOR LINE NUMBER = 1 ---LINE NUMBER= 3 WILL BE SKIPPED IN THE TRIAL PHASE. STOP LIMITS FIGURE OF MERIT REQUIRED= 10 MAX NUMBER OF UNINDEXED LINES IN FIGURE OF MERIT TEST= 1 THE 7 FIRST LINES ADJUSTED BY THEIR HIGHER ORDERS CUBIC,TETRAGONAL,HEXAGONAL AND ORTHOROMBIC SYMMETRY MAX CELL EDGE= 25.0 MAX CELL VOLUME= 2000.0 D1= 0.000200 SSQTL= 0.050000 D2= 0.000400 WAVE= 1.540598 NUMBER OF TEST LINES= 19 IQ REQUIRED= 16 ** CUBIC TEST ********************* MAX. VOLUME= 1000. SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 ** CUBIC TEST ********************* MAX. VOLUME= 2000. SELECTED BASE LINES (1) (2) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 6 ** TETRAGONAL TEST **************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** TETRAGONAL TEST **************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** HEXAGONAL TEST ***************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** HEXAGONAL TEST ***************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2) (1,3) (2,3) BASE LINE ONE.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 BASE LINE TWO.(HKL)-MAX= 4 4 4 MAX H+K+L= 4 ** ORTHORHOMBIC TEST ************** MAX. VOLUME= 1000. SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 ** ORTHORHOMBIC TEST ************** MAX. VOLUME= 2000. SELECTED BASE LINES (1,2,3) (1,2,4) (1,2,5) (1,3,4) (2,3,4) (1,2,6) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 ** MONOCLINIC TEST **************** MAX. VOLUME= 1000. MAX BETA ALLOWED= 135 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 SELECTED BASE LINES= 1 3 4 5 SELECTED BASE LINES= 1 2 3 6 SELECTED BASE LINES= 2 3 4 5 SELECTED BASE LINES= 1 2 3 7 ** MONOCLINIC TEST **************** MAX. VOLUME= 2000. MAX BETA ALLOWED= 135 DEG. (020)-SEARCH SELECTED BASE LINES (1,2,3,4) (1,2,3,5) (1,2,4,5) BASE LINE ONE.(HKL)-MAX= 2 2 2 MAX H+K+L= 2 BASE LINE TWO.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE THREE.(HKL)-MAX= 2 2 2 MAX H+K+L= 3 BASE LINE FOUR.(HKL)-MAX= 2 2 2 MAX H+K+L= 4 SELECTED BASE LINES= 1 3 4 5 SELECTED BASE LINES= 1 2 3 6 SELECTED BASE LINES= 2 3 4 5 SELECTED BASE LINES= 1 2 3 7 ** TRICLINIC TEST ***************** MAX. VOLUME= 2000. TRICLINIC DOMINANT ZONE TEST THIS MAY BE THE SOLUTION !!! THE REFINEMENT OF THE CELL WILL NOW BE REPEATED THREE CYCLES MORE. --- GOOD LUCK ! CYCLE RESULTS 0.011991 0.009791 0.002362 -0.001026 0.002341 -0.004419 0.011991 0.009791 0.002362 -0.001026 0.002341 -0.004419 0.011991 0.009791 0.002362 -0.001026 0.002341 -0.004419 NUMBER OF SINGLE INDEXED LINES = 22 TOTAL NUMBER OF LINES = 25 A = 7.085807 0.003240 A ALFA = 63.013237 0.035016 DEG B = 8.787556 0.003735 A BETA = 86.963554 0.076038 DEG C = 17.870726 0.009100 A GAMMA = 94.134857 0.035155 DEG UNIT CELL VOLUME = 984.40 A**3 H K L SST-OBS SST-CALC DELTA 2TH-OBS 2TH-CALC D-OBS FREE PARAM. 0 0 1 0.002362 0.002362 0.000001 5.572 5.571 15.8480 40 0 1 1 0.007750 0.007734 0.000016 10.101 10.091 8.7500 60 0 0 2 0.009450 0.009447 0.000003 11.157 11.155 7.9240 4 0 1 0 0.009803 0.009791 0.000012 11.364 11.357 7.7800 13 0 1 2 0.010382 0.010400 -0.000019 11.696 11.707 7.5600 14 1 0 0 0.012006 0.011991 0.000015 12.581 12.573 7.0300 8 1 0 1 0.013337 0.013327 0.000011 13.263 13.258 6.6700 39 -1 0 1 0.015386 0.015379 0.000007 14.251 14.247 6.2100 3 0 1 3 0.017822 0.017790 0.000032 15.344 15.330 5.7700 48 1 0 2 0.019403 0.019386 0.000017 16.014 16.007 5.5300 100 -1 1 0 0.019441 16.030 1 1 1 0.021040 16.681 0 0 3 0.021203 0.021255 -0.000052 16.746 16.766 5.2900 14 -1 0 2 0.023546 0.023490 0.000055 17.653 17.632 5.0200 2 1 1 0 0.024119 0.024123 -0.000004 17.869 17.870 4.9600 1 1 -1 1 0.025225 0.025195 0.000030 18.277 18.266 4.8500 4 1 1 3 0.029043 0.029044 -0.000001 19.624 19.625 4.5200 2 0 1 4 0.029910 0.029904 0.000006 19.918 19.916 4.4540 7 -1 1 3 0.030510 0.030519 -0.000009 20.119 20.122 4.4100 7 -1 -1 1 0.031913 0.031930 -0.000017 20.581 20.587 4.3120 24 0 2 1 0.032650 0.032688 -0.000037 20.820 20.832 4.2630 10 0 2 3 0.033895 0.033907 -0.000012 21.218 21.222 4.1840 2 1 -1 2 0.035628 0.035672 -0.000045 21.760 21.774 4.0810 4 -1 0 3 0.036282 0.036325 -0.000043 21.962 21.975 4.0440 1 0 0 4 0.037800 0.037787 0.000012 22.422 22.418 3.9620 3 0 2 0 0.039212 0.039163 0.000049 22.842 22.828 3.8900 3 1 1 4 0.040156 0.040132 0.000025 23.120 23.112 3.8440 8 -1 2 2 0.040296 23.160 NUMBER OF OBS. LINES = 25 NUMBER OF CALC. LINES = 28 M( 20)= 34 AV.EPS.= 0.0000179 F 20 = 96.(0.007500, 28) M( 25)= 28 AV.EPS.= 0.0000213 F 25 = 91.(0.008089, 34) M CF. J.APPL.CRYST. 1(1968)108 F CF. J.APPL.CRYST. 12(1979)60 0 LINES ARE UNINDEXED M-TEST= 34 UNINDEXED IN THE TEST= 0 ANY COMMON FACTOR IN THE QUADRATIC FORMS ? ? CHECK CONVERGENCE IN THE REFINEMENT (EV. USE PROGRAM PIRUM OR PURUM) END OF INDEXING CALCULATIONS The following unit cell reduction is ONLY valid if, and ONLY IF the unit cell found is PRIMITIVE. If the unit cell found is not primitive, you have to convert the cell to a primitive one and run a cell reduction program separately. *** INPUT CELL *** A= 7.08581 B= 8.78756 C= 17.87073 ALFA= 63.013 BETA= 86.964 GAMMA= 94.135 TOLERANCE=0.0500 VOLUME OF INPUT CELL= 984.40 A3 *** REDUCED-CELL *** A= 7.08581 B= 8.78756 C= 15.93924 ALFA= 87.5617 BETA= 84.3102 GAMMA= 85.8651 VOLUME OF THE REDUCED CELL= 984.40 A3 REDUCED FORM NUMBER = 31 INT.TAB.1,SECT. 5.1 *** CONVENTIONAL CELL (METRIC SYMMETRY) *** TRICLINIC P A= 8.78756 B= 15.93924 C= 7.08581 ALFA= 95.6898 BETA= 94.1349 GAMMA= 87.5617 VOLUME OF THE CONVENTIONAL CELL= 984.40 A3 IF YOU WANT TO LOOK FOR A BETTER SOLUTION YOU MAY TRY TO INCREASE THE PARAMETER MERIT ABOVE 34 ....OR PERHAPS THIS WAS THE BEST SOLUTION... USED CPU-TIME= 30.00 SEC. COMMENT. This is a typical dominant zone example. As can be seen on the output list the first 5 lines have h=0. Note that TREOR90 automatically deletes line no.3 from the base line sets because it is within error limits 1/2 of the first line, i.e. it does not contain information about any new parameter. It is included in the final refinement and output list, however. In earlier TREOR versions the user had to exclude such lines from the input data. ........ E N D.........E N D...........E N D..........E N D.........